RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.42■□□□□ 0.22
HMGCS1-201ENST00000325110 GZF1Q9H116 711 aaPredicted RBP16.42■□□□□ 0.22
HMGCS1-201ENST00000325110 INSRP06213 1382 aa16.41■□□□□ 0.22
HMGCS1-201ENST00000325110 EXOSC9Q06265 439 aaKnown RBP16.41■□□□□ 0.22
HMGCS1-201ENST00000325110 ANO8Q9HCE9 1232 aaPredicted RBP16.41■□□□□ 0.22
HMGCS1-201ENST00000325110 PLXNC1O60486 1568 aa16.41■□□□□ 0.22
HMGCS1-201ENST00000325110 ZKSCAN2Q63HK3 967 aa16.41■□□□□ 0.22
HMGCS1-201ENST00000325110 ELL2O00472 640 aaPredicted RBP16.4■□□□□ 0.22
HMGCS1-201ENST00000325110 ABCC1P33527 1531 aa16.4■□□□□ 0.22
HMGCS1-201ENST00000325110 DZIP1LQ8IYY4 767 aaKnown RBP16.4■□□□□ 0.22
HMGCS1-201ENST00000325110 TRMT2AQ8IZ69 625 aaKnown RBP16.4■□□□□ 0.22
HMGCS1-201ENST00000325110 ERVK-7P63135 1459 aa16.39■□□□□ 0.21
HMGCS1-201ENST00000325110 NGEFQ8N5V2 710 aa16.39■□□□□ 0.21
HMGCS1-201ENST00000325110 VGFO15240 615 aaPredicted RBP16.38■□□□□ 0.21
HMGCS1-201ENST00000325110 CLTCL1P53675 1640 aa16.38■□□□□ 0.21
HMGCS1-201ENST00000325110 MADDQ8WXG6 1647 aa16.38■□□□□ 0.21
HMGCS1-201ENST00000325110 FBLN1P23142 703 aa16.37■□□□□ 0.21
HMGCS1-201ENST00000325110 TRPM2O94759 1503 aa16.37■□□□□ 0.21
HMGCS1-201ENST00000325110 RIPK4P57078 832 aa16.37■□□□□ 0.21
HMGCS1-201ENST00000325110 HSP90AA1P07900 732 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-201ENST00000325110 C14orf93Q9H972 538 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-201ENST00000325110 MLECQ14165 292 aa16.36■□□□□ 0.21
HMGCS1-201ENST00000325110 ZCCHC11Q5TAX3 1644 aaKnown RBP16.36■□□□□ 0.21
HMGCS1-201ENST00000325110 ATP7AQ04656 1500 aa16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 NPC1L1Q9UHC9 1359 aa16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 SYNMO15061 1565 aa16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 RTEL1-TNFRSF6BF6WH68 1400 aa16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 POLR3AO14802 1390 aaPredicted RBP16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 PTPRTO14522 1441 aa16.35■□□□□ 0.21
HMGCS1-201ENST00000325110 WDR63Q8IWG1 891 aa16.34■□□□□ 0.21
HMGCS1-201ENST00000325110 HMOX1P09601 288 aa16.33■□□□□ 0.2
HMGCS1-201ENST00000325110 MVPQ14764 893 aaKnown RBP16.33■□□□□ 0.2
HMGCS1-201ENST00000325110 PRAM1Q96QH2 718 aa16.33■□□□□ 0.2
HMGCS1-201ENST00000325110 ZFYVE16Q7Z3T8 1539 aa16.33■□□□□ 0.2
HMGCS1-201ENST00000325110 LNPKQ9C0E8 428 aa16.33■□□□□ 0.2
HMGCS1-201ENST00000325110 LAMC1P11047 1609 aa16.32■□□□□ 0.2
HMGCS1-201ENST00000325110 TERF2IPQ9NYB0 399 aa16.32■□□□□ 0.2
HMGCS1-201ENST00000325110 SSH1Q8WYL5 1049 aa16.32■□□□□ 0.2
HMGCS1-201ENST00000325110 NOB1Q9ULX3 412 aaKnown RBP16.32■□□□□ 0.2
HMGCS1-201ENST00000325110 KDM5AP29375 1690 aaKnown RBP16.32■□□□□ 0.2
HMGCS1-201ENST00000325110 HDGFL2Q7Z4V5 671 aaPredicted RBP16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 FOXD4L1Q9NU39 408 aa16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 IDI1Q13907 227 aa16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 SOX12O15370 315 aa16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 TMPOP42166 694 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 THUMPD2Q9BTF0 503 aaKnown RBP16.31■□□□□ 0.2
HMGCS1-201ENST00000325110 ASXL2Q76L83 1435 aa16.3■□□□□ 0.2
HMGCS1-201ENST00000325110 DIAPH1O60610 1272 aaKnown RBP16.3■□□□□ 0.2
HMGCS1-201ENST00000325110 TRIM27P14373 513 aa16.29■□□□□ 0.2
HMGCS1-201ENST00000325110 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
HMGCS1-201ENST00000325110 C1orf115Q9H7X2 142 aa16.29■□□□□ 0.2
HMGCS1-201ENST00000325110 C22orf23Q9BZE7 217 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 TMEM57Q8N5G2 664 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 CABP1Q9NZU7 370 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 SPHKAPQ2M3C7 1700 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 HSCBQ8IWL3 235 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 TBC1D2Q9BYX2 928 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 DDX19BQ9UMR2 479 aa16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 RNF17Q9BXT8 1623 aaKnown RBP16.28■□□□□ 0.2
HMGCS1-201ENST00000325110 APBB1O00213 710 aa16.27■□□□□ 0.2
HMGCS1-201ENST00000325110 NINLQ9Y2I6 1382 aa16.27■□□□□ 0.2
HMGCS1-201ENST00000325110 ATF7IPQ6VMQ6 1270 aa16.27■□□□□ 0.19
HMGCS1-201ENST00000325110 IPO8O15397 1037 aaKnown RBP16.26■□□□□ 0.19
HMGCS1-201ENST00000325110 PRKAR2BP31323 418 aa16.26■□□□□ 0.19
HMGCS1-201ENST00000325110 IQGAP1P46940 1657 aa16.26■□□□□ 0.19
HMGCS1-201ENST00000325110 NUTM2FA1L443 756 aa16.26■□□□□ 0.19
HMGCS1-201ENST00000325110 USP19O94966 1318 aa16.26■□□□□ 0.19
HMGCS1-201ENST00000325110 ANKRD45Q5TZF3 282 aa16.25■□□□□ 0.19
HMGCS1-201ENST00000325110 CD109Q6YHK3 1445 aa16.25■□□□□ 0.19
HMGCS1-201ENST00000325110 NPATQ14207 1427 aa16.25■□□□□ 0.19
HMGCS1-201ENST00000325110 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
HMGCS1-201ENST00000325110 FBXO31Q5XUX0 539 aaPredicted RBP16.24■□□□□ 0.19
HMGCS1-201ENST00000325110 TBC1D32Q96NH3 1257 aa16.23■□□□□ 0.19
HMGCS1-201ENST00000325110 ABCA6Q8N139 1617 aa16.23■□□□□ 0.19
HMGCS1-201ENST00000325110 TET3O43151 1660 aa16.23■□□□□ 0.19
HMGCS1-201ENST00000325110 FYB1O15117 783 aa16.23■□□□□ 0.19
HMGCS1-201ENST00000325110 CDK19Q9BWU1 502 aa16.23■□□□□ 0.19
HMGCS1-201ENST00000325110 WAPLQ7Z5K2 1190 aa16.22■□□□□ 0.19
HMGCS1-201ENST00000325110 MAP3K4Q9Y6R4 1608 aa16.22■□□□□ 0.19
HMGCS1-201ENST00000325110 A0A1W2PP64 1363 aa16.22■□□□□ 0.19
HMGCS1-201ENST00000325110 ANKRD36BQ8N2N9 1353 aa16.21■□□□□ 0.19
HMGCS1-201ENST00000325110 RPGRIP1LQ68CZ1 1315 aa16.21■□□□□ 0.19
HMGCS1-201ENST00000325110 UHRF1BP1LA0JNW5 1464 aa16.2■□□□□ 0.18
HMGCS1-201ENST00000325110 PNNQ9H307 717 aaKnown RBP16.2■□□□□ 0.18
HMGCS1-201ENST00000325110 MYOM2P54296 1465 aa16.2■□□□□ 0.18
HMGCS1-201ENST00000325110 ZNF518AQ6AHZ1 1483 aa16.2■□□□□ 0.18
HMGCS1-201ENST00000325110 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 CEP152O94986 1710 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 AAMPQ13685 434 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 ESF1Q9H501 851 aaKnown RBP16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 TRIM35Q9UPQ4 493 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 SHROOM2Q13796 1616 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 SBNO2Q9Y2G9 1366 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 CCDC27Q2M243 656 aa16.19■□□□□ 0.18
HMGCS1-201ENST00000325110 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
HMGCS1-201ENST00000325110 GOLGA6L3A6NEY3 463 aa16.17■□□□□ 0.18
HMGCS1-201ENST00000325110 EMILIN1Q9Y6C2 1016 aa16.17■□□□□ 0.18
HMGCS1-201ENST00000325110 MYOM1P52179 1685 aa16.17■□□□□ 0.18
HMGCS1-201ENST00000325110 KIF1BO60333 1816 aa16.17■□□□□ 0.18
HMGCS1-201ENST00000325110 CLASP1Q7Z460 1538 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms