RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 TRDNQ13061 729 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 FMNL2Q96PY5 1086 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 NUTM2DQ5VT03 806 aaPredicted RBP17.85■□□□□ 0.45
SCN3B-201ENST00000299333 GIMAP7Q8NHV1 300 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 OFD1O75665 1012 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 GTF2E1P29083 439 aaPredicted RBP17.85■□□□□ 0.45
SCN3B-201ENST00000299333 CCDC112Q8NEF3 446 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 C9orf78Q9NZ63 289 aaPredicted RBP17.85■□□□□ 0.45
SCN3B-201ENST00000299333 TCEAL9Q9UHQ7 104 aa17.85■□□□□ 0.45
SCN3B-201ENST00000299333 RSPH4AQ5TD94 716 aa17.84■□□□□ 0.45
SCN3B-201ENST00000299333 GRPEL1Q9HAV7 217 aa17.84■□□□□ 0.45
SCN3B-201ENST00000299333 TOP2AP11388 1531 aaKnown RBP17.84■□□□□ 0.45
SCN3B-201ENST00000299333 CCP110O43303 1012 aa17.84■□□□□ 0.45
SCN3B-201ENST00000299333 CDC45O75419 566 aa17.84■□□□□ 0.45
SCN3B-201ENST00000299333 TNNT1P13805 278 aa17.84■□□□□ 0.45
SCN3B-201ENST00000299333 ODF2Q5BJF6 829 aa17.83■□□□□ 0.45
SCN3B-201ENST00000299333 DHX16O60231 1041 aaKnown RBP17.83■□□□□ 0.45
SCN3B-201ENST00000299333 USP8P40818 1118 aa17.83■□□□□ 0.44
SCN3B-201ENST00000299333 SMARCA2P51531 1590 aa17.83■□□□□ 0.44
SCN3B-201ENST00000299333 SAFBQ15424 915 aaKnown RBP eCLIP17.83■□□□□ 0.44
SCN3B-201ENST00000299333 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.83■□□□□ 0.44
SCN3B-201ENST00000299333 PANK1Q8TE04 598 aa17.83■□□□□ 0.44
SCN3B-201ENST00000299333 NECTIN2Q92692 538 aa17.83■□□□□ 0.44
SCN3B-201ENST00000299333 EIF2S2P20042 333 aaKnown RBP17.82■□□□□ 0.44
SCN3B-201ENST00000299333 API5Q9BZZ5 524 aaKnown RBP17.82■□□□□ 0.44
SCN3B-201ENST00000299333 PRDM10Q9NQV6 1147 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 ZFYVE27Q5T4F4 411 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 NGEFQ8N5V2 710 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 ANKRD30AQ9BXX3 1397 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 MYO6Q9UM54 1294 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 TRAK1Q9UPV9 953 aa17.81■□□□□ 0.44
SCN3B-201ENST00000299333 NGDNQ8NEJ9 315 aaKnown RBP17.81■□□□□ 0.44
SCN3B-201ENST00000299333 EPS15P42566 896 aa17.8■□□□□ 0.44
SCN3B-201ENST00000299333 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.8■□□□□ 0.44
SCN3B-201ENST00000299333 ESPNB1AK53 854 aa17.79■□□□□ 0.44
SCN3B-201ENST00000299333 KINO60870 393 aaKnown RBP17.79■□□□□ 0.44
SCN3B-201ENST00000299333 BRPF1P55201 1214 aaPredicted RBP17.79■□□□□ 0.44
SCN3B-201ENST00000299333 FIBPO43427 364 aa17.79■□□□□ 0.44
SCN3B-201ENST00000299333 DHX57Q6P158 1386 aaKnown RBP17.79■□□□□ 0.44
SCN3B-201ENST00000299333 ERICH2A1L162 156 aa17.79■□□□□ 0.44
SCN3B-201ENST00000299333 NUTM2FA1L443 756 aa17.78■□□□□ 0.44
SCN3B-201ENST00000299333 KDM4AO75164 1064 aa17.78■□□□□ 0.44
SCN3B-201ENST00000299333 SMARCE1Q969G3 411 aa17.78■□□□□ 0.44
SCN3B-201ENST00000299333 NEXNQ0ZGT2 675 aa17.78■□□□□ 0.44
SCN3B-201ENST00000299333 IPO4Q8TEX9 1081 aaKnown RBP17.78■□□□□ 0.44
SCN3B-201ENST00000299333 G3BP1Q13283 466 aaKnown RBP eCLIP17.77■□□□□ 0.44
SCN3B-201ENST00000299333 AMOTL1Q8IY63 956 aa17.77■□□□□ 0.44
SCN3B-201ENST00000299333 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.77■□□□□ 0.44
SCN3B-201ENST00000299333 GOLGA6L10A6NI86 522 aa17.77■□□□□ 0.43
SCN3B-201ENST00000299333 CENPHQ9H3R5 247 aa17.77■□□□□ 0.43
SCN3B-201ENST00000299333 ROCK1Q13464 1354 aa17.77■□□□□ 0.43
SCN3B-201ENST00000299333 GOLGA6L7A0A1B0GV03 622 aa17.76■□□□□ 0.43
SCN3B-201ENST00000299333 PDIA4P13667 645 aaKnown RBP17.76■□□□□ 0.43
SCN3B-201ENST00000299333 RIPK4P57078 832 aa17.76■□□□□ 0.43
SCN3B-201ENST00000299333 FAM177A1Q8N128 213 aaPredicted RBP17.76■□□□□ 0.43
SCN3B-201ENST00000299333 NEK4P51957 841 aa17.76■□□□□ 0.43
SCN3B-201ENST00000299333 EIF3JO75822 258 aaKnown RBP17.75■□□□□ 0.43
SCN3B-201ENST00000299333 FKBP5Q13451 457 aaPredicted RBP17.75■□□□□ 0.43
SCN3B-201ENST00000299333 PDCL2Q8N4E4 241 aa17.75■□□□□ 0.43
SCN3B-201ENST00000299333 FAM193AP78312 1265 aa17.75■□□□□ 0.43
SCN3B-201ENST00000299333 ERC2O15083 957 aa17.75■□□□□ 0.43
SCN3B-201ENST00000299333 FILIP1LQ4L180 1135 aa17.75■□□□□ 0.43
SCN3B-201ENST00000299333 CGNQ9P2M7 1197 aaKnown RBP17.75■□□□□ 0.43
SCN3B-201ENST00000299333 CARMIL2Q6F5E8 1435 aa17.74■□□□□ 0.43
SCN3B-201ENST00000299333 ERLIN1O75477 346 aa17.74■□□□□ 0.43
SCN3B-201ENST00000299333 CBX1P83916 185 aa17.74■□□□□ 0.43
SCN3B-201ENST00000299333 RALYLQ86SE5 291 aaKnown RBP17.74■□□□□ 0.43
SCN3B-201ENST00000299333 CEBPZQ03701 1054 aaKnown RBP17.74■□□□□ 0.43
SCN3B-201ENST00000299333 ZHX1Q9UKY1 873 aaPredicted RBP17.74■□□□□ 0.43
SCN3B-201ENST00000299333 IRX3P78415 501 aaPredicted RBP17.74■□□□□ 0.43
SCN3B-201ENST00000299333 CCDC43Q96MW1 224 aaKnown RBP17.73■□□□□ 0.43
SCN3B-201ENST00000299333 USP47Q96K76 1375 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 NOL10Q9BSC4 688 aaKnown RBP17.73■□□□□ 0.43
SCN3B-201ENST00000299333 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 SERPINC1P01008 464 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 CCDC192P0DO97 292 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 INCENPQ9NQS7 918 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 TEFQ10587 303 aa17.73■□□□□ 0.43
SCN3B-201ENST00000299333 RAPGEF2Q9Y4G8 1499 aa17.72■□□□□ 0.43
SCN3B-201ENST00000299333 C1orf141Q5JVX7 400 aa17.72■□□□□ 0.43
SCN3B-201ENST00000299333 ZRSR2Q15696 482 aaKnown RBP17.72■□□□□ 0.43
SCN3B-201ENST00000299333 PSMA5P28066 241 aa17.72■□□□□ 0.43
SCN3B-201ENST00000299333 CCDC102AQ96A19 550 aa17.72■□□□□ 0.43
SCN3B-201ENST00000299333 ATP2B1P20020 1258 aa17.71■□□□□ 0.43
SCN3B-201ENST00000299333 ENOX2Q16206 610 aaKnown RBP17.71■□□□□ 0.43
SCN3B-201ENST00000299333 IBSPP21815 317 aaPredicted RBP17.7■□□□□ 0.42
SCN3B-201ENST00000299333 COG3Q96JB2 828 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 RABEP1Q15276 862 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 ERLIN2O94905 339 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 TRIM34Q9BYJ4 488 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 TAX1BP1Q86VP1 789 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 PDZRN3Q9UPQ7 1066 aa17.7■□□□□ 0.42
SCN3B-201ENST00000299333 ANKRD62A6NC57 917 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 TICAM2Q86XR7 235 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 BRMS1Q9HCU9 246 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 KIF3BO15066 747 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 CCDC181Q5TID7 509 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 MAGEC2Q9UBF1 373 aaPredicted RBP17.69■□□□□ 0.42
SCN3B-201ENST00000299333 WIZO95785 1651 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 AAMPQ13685 434 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms