RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 NCOA3Q9Y6Q9 1424 aa13.93□□□□□ -0.18
UPF3B-201ENST00000276201 LAMC1P11047 1609 aa13.93□□□□□ -0.18
UPF3B-201ENST00000276201 PTCH1Q13635 1447 aa13.93□□□□□ -0.18
UPF3B-201ENST00000276201 C14orf93Q9H972 538 aaKnown RBP13.93□□□□□ -0.18
UPF3B-201ENST00000276201 CFAP70Q5T0N1 1121 aa13.92□□□□□ -0.18
UPF3B-201ENST00000276201 ROBO2Q9HCK4 1378 aa13.92□□□□□ -0.18
UPF3B-201ENST00000276201 MSH6P52701 1360 aa13.91□□□□□ -0.18
UPF3B-201ENST00000276201 PIP4K2BP78356 416 aa13.91□□□□□ -0.18
UPF3B-201ENST00000276201 TMEM132EQ6IEE7 984 aa13.91□□□□□ -0.18
UPF3B-201ENST00000276201 STAC3Q96MF2 364 aa13.91□□□□□ -0.18
UPF3B-201ENST00000276201 LRPPRCP42704 1394 aaKnown RBP13.91□□□□□ -0.18
UPF3B-201ENST00000276201 IRX6P78412 446 aaPredicted RBP13.9□□□□□ -0.18
UPF3B-201ENST00000276201 NOP58Q9Y2X3 529 aaKnown RBP13.9□□□□□ -0.18
UPF3B-201ENST00000276201 TECPR2O15040 1411 aa13.9□□□□□ -0.18
UPF3B-201ENST00000276201 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.9□□□□□ -0.18
UPF3B-201ENST00000276201 C14orf37Q86TY3 774 aa13.89□□□□□ -0.19
UPF3B-201ENST00000276201 KNDC1Q76NI1 1749 aa13.89□□□□□ -0.19
UPF3B-201ENST00000276201 YTHDC2Q9H6S0 1430 aaKnown RBP13.89□□□□□ -0.19
UPF3B-201ENST00000276201 CCDC184Q52MB2 194 aa13.89□□□□□ -0.19
UPF3B-201ENST00000276201 ADGRB1O14514 1584 aa13.89□□□□□ -0.19
UPF3B-201ENST00000276201 NALCNQ8IZF0 1738 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 L3MBTL2Q969R5 705 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 MRS2Q9HD23 443 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 STK26Q9P289 416 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 ABCC11Q96J66 1382 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 C19orf44Q9H6X5 657 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 ADGRL3Q9HAR2 1447 aa13.88□□□□□ -0.19
UPF3B-201ENST00000276201 DEKP35659 375 aaKnown RBP13.87□□□□□ -0.19
UPF3B-201ENST00000276201 C11orf95C9JLR9 678 aaPredicted RBP13.87□□□□□ -0.19
UPF3B-201ENST00000276201 DCCP43146 1447 aa13.86□□□□□ -0.19
UPF3B-201ENST00000276201 KIF7Q2M1P5 1343 aa13.86□□□□□ -0.19
UPF3B-201ENST00000276201 NUDCQ9Y266 331 aa13.86□□□□□ -0.19
UPF3B-201ENST00000276201 PLEKHH1Q9ULM0 1364 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 KIAA1210Q9ULL0 1709 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 ATF3P18847 181 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 B4GALNT3Q6L9W6 998 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 CADPS2Q86UW7 1296 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 SLAIN2Q9P270 581 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 FAM135BQ49AJ0 1406 aa13.84□□□□□ -0.19
UPF3B-201ENST00000276201 WAPLQ7Z5K2 1190 aa13.83□□□□□ -0.19
UPF3B-201ENST00000276201 ROBO1Q9Y6N7 1651 aa13.83□□□□□ -0.2
UPF3B-201ENST00000276201 ROCK2O75116 1388 aaKnown RBP13.83□□□□□ -0.2
UPF3B-201ENST00000276201 DLC1Q96QB1 1528 aa13.83□□□□□ -0.2
UPF3B-201ENST00000276201 KTN1Q86UP2 1357 aaKnown RBP13.82□□□□□ -0.2
UPF3B-201ENST00000276201 HSPA1LP34931 641 aa13.82□□□□□ -0.2
UPF3B-201ENST00000276201 MST1RQ04912 1400 aa13.82□□□□□ -0.2
UPF3B-201ENST00000276201 SIRT1Q96EB6 747 aa13.82□□□□□ -0.2
UPF3B-201ENST00000276201 NBPF8Q3BBV2 869 aa13.81□□□□□ -0.2
UPF3B-201ENST00000276201 FAM9BQ8IZU0 186 aa13.81□□□□□ -0.2
UPF3B-201ENST00000276201 IPO9Q96P70 1041 aaKnown RBP13.81□□□□□ -0.2
UPF3B-201ENST00000276201 CDC42BPGQ6DT37 1551 aa13.81□□□□□ -0.2
UPF3B-201ENST00000276201 NBPF1Q3BBV0 1214 aa13.8□□□□□ -0.2
UPF3B-201ENST00000276201 TRAK1Q9UPV9 953 aa13.8□□□□□ -0.2
UPF3B-201ENST00000276201 PRAM1Q96QH2 718 aa13.79□□□□□ -0.2
UPF3B-201ENST00000276201 TRPM1Q7Z4N2 1603 aa13.79□□□□□ -0.2
UPF3B-201ENST00000276201 ANP32AP39687 249 aaKnown RBP13.78□□□□□ -0.2
UPF3B-201ENST00000276201 ARHGEF28Q8N1W1 1705 aaKnown RBP13.78□□□□□ -0.2
UPF3B-201ENST00000276201 C1orf167Q5SNV9 1468 aa13.77□□□□□ -0.2
UPF3B-201ENST00000276201 SAFB2Q14151 953 aaKnown RBP eCLIP13.77□□□□□ -0.21
UPF3B-201ENST00000276201 BRINP3Q76B58 766 aa13.76□□□□□ -0.21
UPF3B-201ENST00000276201 RALGAPBQ86X10 1494 aa13.76□□□□□ -0.21
UPF3B-201ENST00000276201 POGKQ9P215 609 aa13.76□□□□□ -0.21
UPF3B-201ENST00000276201 INSRP06213 1382 aa13.76□□□□□ -0.21
UPF3B-201ENST00000276201 FMN2Q9NZ56 1722 aa13.75□□□□□ -0.21
UPF3B-201ENST00000276201 ADGRB2O60241 1585 aa13.75□□□□□ -0.21
UPF3B-201ENST00000276201 AHDC1Q5TGY3 1603 aaPredicted RBP13.74□□□□□ -0.21
UPF3B-201ENST00000276201 PAK3O75914 559 aaPredicted RBP13.74□□□□□ -0.21
UPF3B-201ENST00000276201 PHLPP1O60346 1717 aa13.74□□□□□ -0.21
UPF3B-201ENST00000276201 CCDC136Q96JN2 1154 aa13.74□□□□□ -0.21
UPF3B-201ENST00000276201 BRD4O60885 1362 aaPredicted RBP13.73□□□□□ -0.21
UPF3B-201ENST00000276201 COL16A1Q07092 1604 aaPredicted RBP13.73□□□□□ -0.21
UPF3B-201ENST00000276201 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
UPF3B-201ENST00000276201 USP47Q96K76 1375 aa13.72□□□□□ -0.21
UPF3B-201ENST00000276201 MINK1Q8N4C8 1332 aaPredicted RBP13.72□□□□□ -0.21
UPF3B-201ENST00000276201 NHSL1Q5SYE7 1610 aa13.72□□□□□ -0.21
UPF3B-201ENST00000276201 ORAI2Q96SN7 254 aa13.72□□□□□ -0.21
UPF3B-201ENST00000276201 USP35Q9P2H5 1018 aa13.72□□□□□ -0.21
UPF3B-201ENST00000276201 TCERG1O14776 1098 aaKnown RBP13.71□□□□□ -0.21
UPF3B-201ENST00000276201 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.21
UPF3B-201ENST00000276201 GPRASP1Q5JY77 1395 aa13.71□□□□□ -0.21
UPF3B-201ENST00000276201 NUTM2FA1L443 756 aa13.71□□□□□ -0.22
UPF3B-201ENST00000276201 MS4A1P11836 297 aa13.71□□□□□ -0.22
UPF3B-201ENST00000276201 DDX17Q92841 729 aaKnown RBP13.69□□□□□ -0.22
UPF3B-201ENST00000276201 USP32Q8NFA0 1604 aa13.69□□□□□ -0.22
UPF3B-201ENST00000276201 ESCO1Q5FWF5 840 aa13.68□□□□□ -0.22
UPF3B-201ENST00000276201 RTL5Q5HYW3 569 aaPredicted RBP13.68□□□□□ -0.22
UPF3B-201ENST00000276201 CENPJQ9HC77 1338 aaPredicted RBP13.68□□□□□ -0.22
UPF3B-201ENST00000276201 PDE3BQ13370 1112 aa13.68□□□□□ -0.22
UPF3B-201ENST00000276201 RGPD8O14715 1765 aaPredicted RBP13.68□□□□□ -0.22
UPF3B-201ENST00000276201 QRICH2Q9H0J4 1663 aa13.68□□□□□ -0.22
UPF3B-201ENST00000276201 ANKARQ7Z5J8 1434 aa13.68□□□□□ -0.22
UPF3B-201ENST00000276201 TULP4Q9NRJ4 1543 aa13.67□□□□□ -0.22
UPF3B-201ENST00000276201 WASLO00401 505 aaPredicted RBP13.67□□□□□ -0.22
UPF3B-201ENST00000276201 RALBP1Q15311 655 aa13.67□□□□□ -0.22
UPF3B-201ENST00000276201 PRR36Q9H6K5 1346 aa13.66□□□□□ -0.22
UPF3B-201ENST00000276201 KIF1AQ12756 1690 aa13.66□□□□□ -0.22
UPF3B-201ENST00000276201 MED1Q15648 1581 aaPredicted RBP13.65□□□□□ -0.22
UPF3B-201ENST00000276201 CARD11Q9BXL7 1154 aa13.65□□□□□ -0.22
UPF3B-201ENST00000276201 EIF3AQ14152 1382 aaKnown RBP13.65□□□□□ -0.22
UPF3B-201ENST00000276201 JCADQ9P266 1359 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms