RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 BRINP3Q76B58 766 aa35.02■■■■□ 3.2
SSBP4-201ENST00000270061 AHDC1Q5TGY3 1603 aaPredicted RBP35.01■■■■□ 3.19
SSBP4-201ENST00000270061 COL16A1Q07092 1604 aaPredicted RBP34.99■■■■□ 3.19
SSBP4-201ENST00000270061 WAPLQ7Z5K2 1190 aa34.97■■■■□ 3.19
SSBP4-201ENST00000270061 CDC42BPGQ6DT37 1551 aa34.94■■■■□ 3.18
SSBP4-201ENST00000270061 C1orf167Q5SNV9 1468 aa34.93■■■■□ 3.18
SSBP4-201ENST00000270061 NHSL1Q5SYE7 1610 aa34.92■■■■□ 3.18
SSBP4-201ENST00000270061 PLEKHH1Q9ULM0 1364 aa34.92■■■■□ 3.18
SSBP4-201ENST00000270061 SIRT1Q96EB6 747 aa34.91■■■■□ 3.18
SSBP4-201ENST00000270061 JCADQ9P266 1359 aa34.91■■■■□ 3.18
SSBP4-201ENST00000270061 ADGRB1O14514 1584 aa34.9■■■■□ 3.18
SSBP4-201ENST00000270061 PHF23Q9BUL5 403 aaPredicted RBP34.88■■■■□ 3.17
SSBP4-201ENST00000270061 ILDR2Q71H61 639 aa34.86■■■■□ 3.17
SSBP4-201ENST00000270061 L3MBTL2Q969R5 705 aa34.85■■■■□ 3.17
SSBP4-201ENST00000270061 DLC1Q96QB1 1528 aa34.84■■■■□ 3.17
SSBP4-201ENST00000270061 SHPRHQ149N8 1683 aa34.82■■■■□ 3.17
SSBP4-201ENST00000270061 ORAI2Q96SN7 254 aa34.82■■■■□ 3.17
SSBP4-201ENST00000270061 PRAM1Q96QH2 718 aa34.82■■■■□ 3.16
SSBP4-201ENST00000270061 FMN2Q9NZ56 1722 aa34.8■■■■□ 3.16
SSBP4-201ENST00000270061 DDX17Q92841 729 aaKnown RBP34.79■■■■□ 3.16
SSBP4-201ENST00000270061 POGKQ9P215 609 aa34.79■■■■□ 3.16
SSBP4-201ENST00000270061 TRAK1Q9UPV9 953 aa34.79■■■■□ 3.16
SSBP4-201ENST00000270061 KIAA1210Q9ULL0 1709 aa34.78■■■■□ 3.16
SSBP4-201ENST00000270061 SAFB2Q14151 953 aaKnown RBP eCLIP34.78■■■■□ 3.161e-6■■■■□ 20.5
SSBP4-201ENST00000270061 DIEXFQ68CQ4 756 aaKnown RBP34.78■■■■□ 3.16
SSBP4-201ENST00000270061 ESCO1Q5FWF5 840 aa34.76■■■■□ 3.15
SSBP4-201ENST00000270061 SPATA31A6Q5VVP1 1343 aa34.75■■■■□ 3.15
SSBP4-201ENST00000270061 NUTM2FA1L443 756 aa34.75■■■■□ 3.15
SSBP4-201ENST00000270061 LRRC59Q96AG4 307 aaKnown RBP34.75■■■■□ 3.15
SSBP4-201ENST00000270061 RGPD8O14715 1765 aaPredicted RBP34.71■■■■□ 3.15
SSBP4-201ENST00000270061 ARHGEF28Q8N1W1 1705 aaKnown RBP34.71■■■■□ 3.15
SSBP4-201ENST00000270061 SOS2Q07890 1332 aaPredicted RBP34.68■■■■□ 3.14
SSBP4-201ENST00000270061 ADGRB2O60241 1585 aa34.67■■■■□ 3.14
SSBP4-201ENST00000270061 NPHP3Q7Z494 1330 aa34.66■■■■□ 3.14
SSBP4-201ENST00000270061 LRP6O75581 1613 aa34.66■■■■□ 3.14
SSBP4-201ENST00000270061 KIF1AQ12756 1690 aa34.64■■■■□ 3.14
SSBP4-201ENST00000270061 RGS17Q9UGC6 210 aaPredicted RBP34.64■■■■□ 3.14
SSBP4-201ENST00000270061 FOXO3O43524 673 aa34.62■■■■□ 3.13
SSBP4-201ENST00000270061 PNPLA6Q8IY17 1366 aa34.62■■■■□ 3.13
SSBP4-201ENST00000270061 MINK1Q8N4C8 1332 aaPredicted RBP34.62■■■■□ 3.13
SSBP4-201ENST00000270061 NBPF1Q3BBV0 1214 aa34.62■■■■□ 3.13
SSBP4-201ENST00000270061 HIRIP3Q9BW71 556 aaPredicted RBP34.62■■■■□ 3.13
SSBP4-201ENST00000270061 MEX3CQ5U5Q3 659 aaKnown RBP34.61■■■■□ 3.13
SSBP4-201ENST00000270061 NUTM2BA6NNL0 878 aaPredicted RBP34.59■■■■□ 3.13
SSBP4-201ENST00000270061 NUTM2EB1AL46 878 aaPredicted RBP34.59■■■■□ 3.13
SSBP4-201ENST00000270061 NUTM2AQ8IVF1 878 aaPredicted RBP34.59■■■■□ 3.13
SSBP4-201ENST00000270061 NBPF8Q3BBV2 869 aa34.59■■■■□ 3.13
SSBP4-201ENST00000270061 PXDNQ92626 1479 aa34.58■■■■□ 3.13
SSBP4-201ENST00000270061 USP32Q8NFA0 1604 aa34.57■■■■□ 3.12
SSBP4-201ENST00000270061 ANKARQ7Z5J8 1434 aa34.56■■■■□ 3.12
SSBP4-201ENST00000270061 XPCQ01831 940 aaPredicted RBP34.55■■■■□ 3.12
SSBP4-201ENST00000270061 PHF8Q9UPP1 1060 aa34.54■■■■□ 3.12
SSBP4-201ENST00000270061 EIF3AQ14152 1382 aaKnown RBP34.54■■■■□ 3.12
SSBP4-201ENST00000270061 TRPM1Q7Z4N2 1603 aa34.53■■■■□ 3.12
SSBP4-201ENST00000270061 SOCS7O14512 581 aa34.53■■■■□ 3.12
SSBP4-201ENST00000270061 WASLO00401 505 aaPredicted RBP34.52■■■■□ 3.12
SSBP4-201ENST00000270061 TULP4Q9NRJ4 1543 aa34.5■■■■□ 3.11
SSBP4-201ENST00000270061 COL22A1Q8NFW1 1626 aaPredicted RBP34.49■■■■□ 3.11
SSBP4-201ENST00000270061 POTEAQ6S8J7 498 aa34.47■■■■□ 3.11
SSBP4-201ENST00000270061 KRT28Q7Z3Y7 464 aa34.46■■■■□ 3.11
SSBP4-201ENST00000270061 PMFBP1Q8TBY8 1022 aa34.44■■■■□ 3.1
SSBP4-201ENST00000270061 PRR36Q9H6K5 1346 aa34.44■■■■□ 3.1
SSBP4-201ENST00000270061 ITSN1Q15811 1721 aa34.43■■■■□ 3.1
SSBP4-201ENST00000270061 EIF4G2P78344 907 aaKnown RBP eCLIP34.42■■■■□ 3.16e-7■■□□□ 11.9
SSBP4-201ENST00000270061 ZNF772Q68DY9 489 aaPredicted RBP34.42■■■■□ 3.1
SSBP4-201ENST00000270061 ROCK2O75116 1388 aaKnown RBP34.42■■■■□ 3.1
SSBP4-201ENST00000270061 PSME1Q06323 249 aa34.41■■■■□ 3.1
SSBP4-201ENST00000270061 CENPJQ9HC77 1338 aaPredicted RBP34.41■■■■□ 3.1
SSBP4-201ENST00000270061 QRICH2Q9H0J4 1663 aa34.4■■■■□ 3.1
SSBP4-201ENST00000270061 SPATA31A3Q5VYP0 1347 aa34.4■■■■□ 3.1
SSBP4-201ENST00000270061 ADAMTS2O95450 1211 aa34.39■■■■□ 3.1
SSBP4-201ENST00000270061 C8orf37Q96NL8 207 aa34.39■■■■□ 3.1
SSBP4-201ENST00000270061 RALGAPBQ86X10 1494 aa34.39■■■■□ 3.1
SSBP4-201ENST00000270061 CDK19Q9BWU1 502 aa34.39■■■■□ 3.1
SSBP4-201ENST00000270061 ATP7BP35670 1465 aa34.38■■■■□ 3.09
SSBP4-201ENST00000270061 HSPA5P11021 654 aaKnown RBP34.37■■■■□ 3.09
SSBP4-201ENST00000270061 AFF2P51816 1311 aa34.36■■■■□ 3.09
SSBP4-201ENST00000270061 NUDT16Q96DE0 195 aaKnown RBP34.36■■■■□ 3.09
SSBP4-201ENST00000270061 TNS3Q68CZ2 1445 aa34.35■■■■□ 3.09
SSBP4-201ENST00000270061 SBNO1A3KN83 1393 aa34.34■■■■□ 3.09
SSBP4-201ENST00000270061 MARF1Q9Y4F3 1742 aaKnown RBP34.34■■■■□ 3.09
SSBP4-201ENST00000270061 GPRASP1Q5JY77 1395 aa34.32■■■■□ 3.09
SSBP4-201ENST00000270061 NGLY1Q96IV0 654 aa34.32■■■■□ 3.08
SSBP4-201ENST00000270061 NGDNQ8NEJ9 315 aaKnown RBP34.31■■■■□ 3.08
SSBP4-201ENST00000270061 TOPAZ1Q8N9V7 1692 aa34.3■■■■□ 3.08
SSBP4-201ENST00000270061 TRPM3Q9HCF6 1732 aaPredicted RBP34.3■■■■□ 3.08
SSBP4-201ENST00000270061 LMOD2Q6P5Q4 547 aa34.28■■■■□ 3.08
SSBP4-201ENST00000270061 CCDC61Q9Y6R9 512 aa34.27■■■■□ 3.08
SSBP4-201ENST00000270061 ARHGEF10O15013 1369 aa34.27■■■■□ 3.08
SSBP4-201ENST00000270061 SRPK2P78362 688 aaKnown RBP34.26■■■■□ 3.08
SSBP4-201ENST00000270061 ALS2Q96Q42 1657 aa34.23■■■■□ 3.07
SSBP4-201ENST00000270061 CARD11Q9BXL7 1154 aa34.23■■■■□ 3.07
SSBP4-201ENST00000270061 CABP2Q9NPB3 220 aa34.21■■■■□ 3.07
SSBP4-201ENST00000270061 ABCA3Q99758 1704 aa34.21■■■■□ 3.07
SSBP4-201ENST00000270061 HAP1P54257 671 aaPredicted RBP34.21■■■■□ 3.07
SSBP4-201ENST00000270061 RXRBP28702 533 aa34.2■■■■□ 3.07
SSBP4-201ENST00000270061 MIER1Q8N108 512 aa34.2■■■■□ 3.07
SSBP4-201ENST00000270061 FNBP4Q8N3X1 1017 aaPredicted RBP34.2■■■■□ 3.07
SSBP4-201ENST00000270061 QTRT2Q9H974 415 aaKnown RBP34.19■■■■□ 3.06
SSBP4-201ENST00000270061 USP21Q9UK80 565 aa34.19■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms