RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 FAM161AQ3B820 660 aa13.66□□□□□ -0.22
PTPN4-201ENST00000263708 BAZ1BQ9UIG0 1483 aaKnown RBP13.66□□□□□ -0.22
PTPN4-201ENST00000263708 CLASRPQ8N2M8 674 aaKnown RBP13.66□□□□□ -0.22
PTPN4-201ENST00000263708 CHMP5Q9NZZ3 219 aa13.66□□□□□ -0.22
PTPN4-201ENST00000263708 KIF3BO15066 747 aa13.66□□□□□ -0.22
PTPN4-201ENST00000263708 LEKR1Q6ZMV7 388 aa13.66□□□□□ -0.22
PTPN4-201ENST00000263708 HMGN5P82970 282 aaKnown RBP13.65□□□□□ -0.22
PTPN4-201ENST00000263708 CENPQQ7L2Z9 268 aaPredicted RBP13.65□□□□□ -0.22
PTPN4-201ENST00000263708 EEA1Q15075 1411 aa13.65□□□□□ -0.22
PTPN4-201ENST00000263708 ZKSCAN2Q63HK3 967 aa13.65□□□□□ -0.22
PTPN4-201ENST00000263708 SDF4Q9BRK5 362 aa13.65□□□□□ -0.22
PTPN4-201ENST00000263708 TXLNAP40222 546 aa13.64□□□□□ -0.23
PTPN4-201ENST00000263708 ZHX3Q9H4I2 956 aa13.64□□□□□ -0.23
PTPN4-201ENST00000263708 ATP2B1P20020 1258 aa13.64□□□□□ -0.23
PTPN4-201ENST00000263708 AIMP1Q12904 312 aaKnown RBP13.64□□□□□ -0.23
PTPN4-201ENST00000263708 SETD5Q9C0A6 1442 aa13.64□□□□□ -0.23
PTPN4-201ENST00000263708 SEPT11Q9NVA2 429 aaKnown RBP13.64□□□□□ -0.23
PTPN4-201ENST00000263708 ROCK1Q13464 1354 aa13.64□□□□□ -0.23
PTPN4-201ENST00000263708 FKBP5Q13451 457 aaPredicted RBP13.63□□□□□ -0.23
PTPN4-201ENST00000263708 SART3Q15020 963 aaKnown RBP13.63□□□□□ -0.23
PTPN4-201ENST00000263708 RIC3Q7Z5B4 369 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 ERC2O15083 957 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 FAM177BA6PVY3 158 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 FILIP1LQ4L180 1135 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 SLC3A2P08195 630 aaKnown RBP13.63□□□□□ -0.23
PTPN4-201ENST00000263708 GOLGA6L7A0A1B0GV03 622 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 WASHC2AQ641Q2 1341 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 KIAA0754O94854 1291 aa13.63□□□□□ -0.23
PTPN4-201ENST00000263708 NINLQ9Y2I6 1382 aa13.62□□□□□ -0.23
PTPN4-201ENST00000263708 PHLDB1Q86UU1 1377 aa13.61□□□□□ -0.23
PTPN4-201ENST00000263708 DEF6Q9H4E7 631 aa13.61□□□□□ -0.23
PTPN4-201ENST00000263708 FAM43AQ8N2R8 423 aa13.61□□□□□ -0.23
PTPN4-201ENST00000263708 FMNL2Q96PY5 1086 aa13.61□□□□□ -0.23
PTPN4-201ENST00000263708 INTS3Q68E01 1043 aaKnown RBP13.61□□□□□ -0.23
PTPN4-201ENST00000263708 MPHOSPH10O00566 681 aaKnown RBP13.6□□□□□ -0.23
PTPN4-201ENST00000263708 CCDC181Q5TID7 509 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 STK11IPQ8N1F8 1099 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 TANGO6Q9C0B7 1094 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 WRNQ14191 1432 aaPredicted RBP eCLIP13.6□□□□□ -0.23
PTPN4-201ENST00000263708 DYDC1Q8WWB3 177 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 SPDYE4A6NLX3 237 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 ZNHIT6Q9NWK9 470 aaKnown RBP13.6□□□□□ -0.23
PTPN4-201ENST00000263708 DESP17661 470 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 TRIM5Q9C035 493 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 INCENPQ9NQS7 918 aa13.6□□□□□ -0.23
PTPN4-201ENST00000263708 COG6Q9Y2V7 657 aa13.59□□□□□ -0.23
PTPN4-201ENST00000263708 FAM193AP78312 1265 aa13.59□□□□□ -0.23
PTPN4-201ENST00000263708 RBM5P52756 815 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTPN4-201ENST00000263708 WDR70Q9NW82 654 aa13.59□□□□□ -0.23
PTPN4-201ENST00000263708 NF2P35240 595 aa13.59□□□□□ -0.23
PTPN4-201ENST00000263708 TBC1D2BQ9UPU7 963 aa13.59□□□□□ -0.23
PTPN4-201ENST00000263708 SSR1P43307 286 aaKnown RBP13.58□□□□□ -0.23
PTPN4-201ENST00000263708 CCDC39Q9UFE4 941 aa13.58□□□□□ -0.23
PTPN4-201ENST00000263708 CCDC112Q8NEF3 446 aa13.58□□□□□ -0.24
PTPN4-201ENST00000263708 KINO60870 393 aaKnown RBP13.58□□□□□ -0.24
PTPN4-201ENST00000263708 NLRP13Q86W25 1043 aa13.58□□□□□ -0.24
PTPN4-201ENST00000263708 KIF15Q9NS87 1388 aa13.58□□□□□ -0.24
PTPN4-201ENST00000263708 CEBPZQ03701 1054 aaKnown RBP13.58□□□□□ -0.24
PTPN4-201ENST00000263708 CRBNQ96SW2 442 aa13.58□□□□□ -0.24
PTPN4-201ENST00000263708 MPHOSPH9Q99550 1183 aa13.58□□□□□ -0.24
PTPN4-201ENST00000263708 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.57□□□□□ -0.24
PTPN4-201ENST00000263708 ANKRD30AQ9BXX3 1397 aa13.57□□□□□ -0.24
PTPN4-201ENST00000263708 KIF6Q6ZMV9 814 aa13.57□□□□□ -0.24
PTPN4-201ENST00000263708 CCP110O43303 1012 aa13.57□□□□□ -0.24
PTPN4-201ENST00000263708 PSMA5P28066 241 aa13.57□□□□□ -0.24
PTPN4-201ENST00000263708 PDE4AP27815 886 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 DNAJC2Q99543 621 aaKnown RBP13.56□□□□□ -0.24
PTPN4-201ENST00000263708 TRIM21P19474 475 aaKnown RBP13.56□□□□□ -0.24
PTPN4-201ENST00000263708 TSPYL4Q9UJ04 414 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 CCDC66A2RUB6 948 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 LUC7LQ9NQ29 371 aaKnown RBP13.56□□□□□ -0.24
PTPN4-201ENST00000263708 DDX19BQ9UMR2 479 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 CARMIL2Q6F5E8 1435 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 SF3B2Q13435 895 aaKnown RBP13.56□□□□□ -0.24
PTPN4-201ENST00000263708 E9PSI1 815 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 CHMP4BP1P59074 171 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 PDE3BQ13370 1112 aa13.56□□□□□ -0.24
PTPN4-201ENST00000263708 MINK1Q8N4C8 1332 aaPredicted RBP13.56□□□□□ -0.24
PTPN4-201ENST00000263708 EVC2Q86UK5 1308 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 NASPP49321 788 aaPredicted RBP13.55□□□□□ -0.24
PTPN4-201ENST00000263708 NUCB2P80303 420 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 RNF214Q8ND24 703 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 SPC24Q8NBT2 197 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 CNTROBQ8N137 903 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 FSD1Q9BTV5 496 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 GOLGA6L10A0A0M3HER8 536 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 ANAPC15P60006 121 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 STIM1Q13586 685 aa13.55□□□□□ -0.24
PTPN4-201ENST00000263708 HNRNPMP52272 730 aaKnown RBP eCLIP13.54□□□□□ -0.241e-6■■■■□ 21.6
PTPN4-201ENST00000263708 RABEP1Q15276 862 aa13.54□□□□□ -0.24
PTPN4-201ENST00000263708 PANK3Q9H999 370 aa13.54□□□□□ -0.24
PTPN4-201ENST00000263708 SERPINC1P01008 464 aa13.54□□□□□ -0.24
PTPN4-201ENST00000263708 PSMD1Q99460 953 aa13.54□□□□□ -0.24
PTPN4-201ENST00000263708 ATF3P18847 181 aa13.54□□□□□ -0.24
PTPN4-201ENST00000263708 RAPGEF4Q8WZA2 1011 aa13.53□□□□□ -0.24
PTPN4-201ENST00000263708 RIPK4P57078 832 aa13.53□□□□□ -0.24
PTPN4-201ENST00000263708 FAM177A1Q8N128 213 aaPredicted RBP13.53□□□□□ -0.24
PTPN4-201ENST00000263708 PPFIBP1Q86W92 1011 aa13.53□□□□□ -0.24
PTPN4-201ENST00000263708 CCDC91Q7Z6B0 441 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms