RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 WDR63Q8IWG1 891 aa10.58□□□□□ -0.72
PTPN3-201ENST00000262539 HDAC5Q9UQL6 1122 aa10.58□□□□□ -0.72
PTPN3-201ENST00000262539 FAM135BQ49AJ0 1406 aa10.58□□□□□ -0.72
PTPN3-201ENST00000262539 ANKLE2Q86XL3 938 aa10.58□□□□□ -0.72
PTPN3-201ENST00000262539 YEATS2Q9ULM3 1422 aa10.57□□□□□ -0.72
PTPN3-201ENST00000262539 SETBP1Q9Y6X0 1596 aa10.57□□□□□ -0.72
PTPN3-201ENST00000262539 TMEM2Q9UHN6 1383 aa10.57□□□□□ -0.72
PTPN3-201ENST00000262539 U2AF1L5P0DN76 240 aaPredicted RBP10.57□□□□□ -0.72
PTPN3-201ENST00000262539 U2AF1Q01081 240 aaKnown RBP eCLIP10.57□□□□□ -0.72
PTPN3-201ENST00000262539 YTHDC2Q9H6S0 1430 aaKnown RBP10.57□□□□□ -0.72
PTPN3-201ENST00000262539 STK26Q9P289 416 aa10.57□□□□□ -0.72
PTPN3-201ENST00000262539 DEPDC5O75140 1603 aa10.56□□□□□ -0.72
PTPN3-201ENST00000262539 DIAPH1O60610 1272 aaKnown RBP10.56□□□□□ -0.72
PTPN3-201ENST00000262539 CCDC27Q2M243 656 aa10.56□□□□□ -0.72
PTPN3-201ENST00000262539 AEBP2Q6ZN18 517 aaPredicted RBP10.56□□□□□ -0.72
PTPN3-201ENST00000262539 DISP3Q9P2K9 1392 aa10.56□□□□□ -0.72
PTPN3-201ENST00000262539 DIP2CQ9Y2E4 1556 aa10.55□□□□□ -0.72
PTPN3-201ENST00000262539 ZC3H13Q5T200 1668 aaKnown RBP10.55□□□□□ -0.72
PTPN3-201ENST00000262539 PRAM1Q96QH2 718 aa10.55□□□□□ -0.72
PTPN3-201ENST00000262539 TTC21AQ8NDW8 1320 aa10.55□□□□□ -0.72
PTPN3-201ENST00000262539 IL16Q14005 1332 aa10.55□□□□□ -0.72
PTPN3-201ENST00000262539 SYNMO15061 1565 aa10.55□□□□□ -0.72
PTPN3-201ENST00000262539 TCERG1O14776 1098 aaKnown RBP10.55□□□□□ -0.72
PTPN3-201ENST00000262539 FCHSD2O94868 740 aa10.54□□□□□ -0.72
PTPN3-201ENST00000262539 MINK1Q8N4C8 1332 aaPredicted RBP10.54□□□□□ -0.72
PTPN3-201ENST00000262539 WASLO00401 505 aaPredicted RBP10.54□□□□□ -0.72
PTPN3-201ENST00000262539 PDE3AQ14432 1141 aa10.54□□□□□ -0.72
PTPN3-201ENST00000262539 TAOK2Q9UL54 1235 aa10.53□□□□□ -0.72
PTPN3-201ENST00000262539 NSD3Q9BZ95 1437 aa10.53□□□□□ -0.72
PTPN3-201ENST00000262539 PLEKHG1Q9ULL1 1385 aa10.52□□□□□ -0.72
PTPN3-201ENST00000262539 TMEM132EQ6IEE7 984 aa10.52□□□□□ -0.72
PTPN3-201ENST00000262539 UGGT1Q9NYU2 1555 aa10.52□□□□□ -0.73
PTPN3-201ENST00000262539 PPM1GO15355 546 aaPredicted RBP10.51□□□□□ -0.73
PTPN3-201ENST00000262539 SLC12A5Q9H2X9 1139 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 KIAA1210Q9ULL0 1709 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 KIF16BQ96L93 1317 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 RRP1P56182 461 aaKnown RBP10.51□□□□□ -0.73
PTPN3-201ENST00000262539 GNAI1P63096 354 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 NGDNQ8NEJ9 315 aaKnown RBP10.51□□□□□ -0.73
PTPN3-201ENST00000262539 DLC1Q96QB1 1528 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 DIP2BQ9P265 1576 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 ARHGEF40Q8TER5 1519 aa10.51□□□□□ -0.73
PTPN3-201ENST00000262539 U2SURPO15042 1029 aaKnown RBP10.5□□□□□ -0.73
PTPN3-201ENST00000262539 BCORL1Q5H9F3 1711 aa10.5□□□□□ -0.73
PTPN3-201ENST00000262539 PLEKHG3A1L390 1219 aa10.5□□□□□ -0.73
PTPN3-201ENST00000262539 CLSTN1O94985 981 aa10.5□□□□□ -0.73
PTPN3-201ENST00000262539 CDK19Q9BWU1 502 aa10.5□□□□□ -0.73
PTPN3-201ENST00000262539 TTC21BQ7Z4L5 1316 aa10.5□□□□□ -0.73
PTPN3-201ENST00000262539 KIF24Q5T7B8 1368 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 TECPR2O15040 1411 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
PTPN3-201ENST00000262539 MAP3K4Q9Y6R4 1608 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 MED14O60244 1454 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 PMFBP1Q8TBY8 1022 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 ADAMTS8Q9UP79 889 aa10.49□□□□□ -0.73
PTPN3-201ENST00000262539 MTHFSP49914 203 aa10.48□□□□□ -0.73
PTPN3-201ENST00000262539 ATP7BP35670 1465 aa10.48□□□□□ -0.73
PTPN3-201ENST00000262539 SOS1Q07889 1333 aaPredicted RBP10.48□□□□□ -0.73
PTPN3-201ENST00000262539 NUDT16Q96DE0 195 aaKnown RBP10.47□□□□□ -0.73
PTPN3-201ENST00000262539 AATKQ6ZMQ8 1374 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 RNF123Q5XPI4 1314 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 APAF1O14727 1248 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 RWDD1Q9H446 243 aaPredicted RBP10.47□□□□□ -0.73
PTPN3-201ENST00000262539 MADDQ8WXG6 1647 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 KIDINS220Q9ULH0 1771 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 API5Q9BZZ5 524 aaKnown RBP10.47□□□□□ -0.73
PTPN3-201ENST00000262539 BLMP54132 1417 aaPredicted RBP10.47□□□□□ -0.73
PTPN3-201ENST00000262539 EDC4Q6P2E9 1401 aaKnown RBP10.47□□□□□ -0.73
PTPN3-201ENST00000262539 A2ML1A8K2U0 1454 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 TRPM1Q7Z4N2 1603 aa10.47□□□□□ -0.73
PTPN3-201ENST00000262539 SAFB2Q14151 953 aaKnown RBP eCLIP10.46□□□□□ -0.73
PTPN3-201ENST00000262539 CENPQQ7L2Z9 268 aaPredicted RBP10.46□□□□□ -0.73
PTPN3-201ENST00000262539 TCP11L2Q8N4U5 519 aa10.46□□□□□ -0.73
PTPN3-201ENST00000262539 SPATA31D1Q6ZQQ2 1576 aa10.46□□□□□ -0.73
PTPN3-201ENST00000262539 KCNH5Q8NCM2 988 aa10.46□□□□□ -0.73
PTPN3-201ENST00000262539 DDRGK1Q96HY6 314 aa10.46□□□□□ -0.73
PTPN3-201ENST00000262539 FTSJ3Q8IY81 847 aaKnown RBP10.45□□□□□ -0.74
PTPN3-201ENST00000262539 GAS2L2Q8NHY3 880 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 CABP2Q9NPB3 220 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 RIMBP3CA6NJZ7 1639 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 RIMBP3BA6NNM3 1639 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 RIMBP3Q9UFD9 1639 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 CABP1Q9NZU7 370 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 RTF1Q92541 710 aaKnown RBP10.45□□□□□ -0.74
PTPN3-201ENST00000262539 ISY1Q9ULR0 285 aaKnown RBP10.45□□□□□ -0.74
PTPN3-201ENST00000262539 TPRNQ4KMQ1 711 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 FRMPD1Q5SYB0 1578 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 ZKSCAN2Q63HK3 967 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 CLTCL1P53675 1640 aa10.45□□□□□ -0.74
PTPN3-201ENST00000262539 SLFN5Q08AF3 891 aa10.44□□□□□ -0.74
PTPN3-201ENST00000262539 MROH1Q8NDA8 1641 aa10.44□□□□□ -0.74
PTPN3-201ENST00000262539 LAS1LQ9Y4W2 734 aaKnown RBP10.44□□□□□ -0.74
PTPN3-201ENST00000262539 IL27Q8NEV9 243 aa10.43□□□□□ -0.74
PTPN3-201ENST00000262539 ANKARQ7Z5J8 1434 aa10.43□□□□□ -0.74
PTPN3-201ENST00000262539 PSME1Q06323 249 aa10.43□□□□□ -0.74
PTPN3-201ENST00000262539 DDX19BQ9UMR2 479 aa10.43□□□□□ -0.74
PTPN3-201ENST00000262539 NKTRP30414 1462 aaKnown RBP10.43□□□□□ -0.74
PTPN3-201ENST00000262539 SPHKAPQ2M3C7 1700 aa10.43□□□□□ -0.74
PTPN3-201ENST00000262539 PPIP5K1Q6PFW1 1433 aa10.42□□□□□ -0.74
PTPN3-201ENST00000262539 BABAM1Q9NWV8 329 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms