RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 SHPRHQ149N8 1683 aa18.55■□□□□ 0.56
SLIRP-201ENST00000238688 RGL3Q3MIN7 710 aa18.55■□□□□ 0.56
SLIRP-201ENST00000238688 LRP6O75581 1613 aa18.52■□□□□ 0.56
SLIRP-201ENST00000238688 MYOM2P54296 1465 aa18.52■□□□□ 0.56
SLIRP-201ENST00000238688 GPRASP1Q5JY77 1395 aa18.52■□□□□ 0.55
SLIRP-201ENST00000238688 NBPF8Q3BBV2 869 aa18.51■□□□□ 0.55
SLIRP-201ENST00000238688 POTEAQ6S8J7 498 aa18.51■□□□□ 0.55
SLIRP-201ENST00000238688 PIK3C2GO75747 1445 aa18.5■□□□□ 0.55
SLIRP-201ENST00000238688 C1orf167Q5SNV9 1468 aa18.5■□□□□ 0.55
SLIRP-201ENST00000238688 KNDC1Q76NI1 1749 aa18.49■□□□□ 0.55
SLIRP-201ENST00000238688 TECPR2O15040 1411 aa18.49■□□□□ 0.55
SLIRP-201ENST00000238688 NRXN1Q9ULB1 1477 aa18.48■□□□□ 0.55
SLIRP-201ENST00000238688 DCAF11Q8TEB1 546 aa18.48■□□□□ 0.55
SLIRP-201ENST00000238688 DDX17Q92841 729 aaKnown RBP18.48■□□□□ 0.55
SLIRP-201ENST00000238688 SPATA31A6Q5VVP1 1343 aa18.47■□□□□ 0.55
SLIRP-201ENST00000238688 LRPPRCP42704 1394 aaKnown RBP18.46■□□□□ 0.55
SLIRP-201ENST00000238688 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
SLIRP-201ENST00000238688 ABCC11Q96J66 1382 aa18.44■□□□□ 0.54
SLIRP-201ENST00000238688 USP47Q96K76 1375 aa18.44■□□□□ 0.54
SLIRP-201ENST00000238688 CDC42BPGQ6DT37 1551 aa18.44■□□□□ 0.54
SLIRP-201ENST00000238688 HSPA5P11021 654 aaKnown RBP18.44■□□□□ 0.54
SLIRP-201ENST00000238688 ORAI2Q96SN7 254 aa18.44■□□□□ 0.54
SLIRP-201ENST00000238688 PLEKHH1Q9ULM0 1364 aa18.43■□□□□ 0.54
SLIRP-201ENST00000238688 WAPLQ7Z5K2 1190 aa18.43■□□□□ 0.54
SLIRP-201ENST00000238688 C14orf93Q9H972 538 aaKnown RBP18.43■□□□□ 0.54
SLIRP-201ENST00000238688 ROCK2O75116 1388 aaKnown RBP18.42■□□□□ 0.54
SLIRP-201ENST00000238688 STK26Q9P289 416 aa18.42■□□□□ 0.54
SLIRP-201ENST00000238688 YTHDC2Q9H6S0 1430 aaKnown RBP18.41■□□□□ 0.54
SLIRP-201ENST00000238688 SLC24A1O60721 1099 aa18.4■□□□□ 0.54
SLIRP-201ENST00000238688 SOS2Q07890 1332 aaPredicted RBP18.4■□□□□ 0.54
SLIRP-201ENST00000238688 PNPLA6Q8IY17 1366 aa18.4■□□□□ 0.54
SLIRP-201ENST00000238688 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.53
SLIRP-201ENST00000238688 LRRC59Q96AG4 307 aaKnown RBP18.39■□□□□ 0.53
SLIRP-201ENST00000238688 CARD11Q9BXL7 1154 aa18.39■□□□□ 0.53
SLIRP-201ENST00000238688 FMN2Q9NZ56 1722 aa18.38■□□□□ 0.53
SLIRP-201ENST00000238688 RGPD8O14715 1765 aaPredicted RBP18.38■□□□□ 0.53
SLIRP-201ENST00000238688 NUTM2BA6NNL0 878 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-201ENST00000238688 NUTM2EB1AL46 878 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-201ENST00000238688 ADGRB1O14514 1584 aa18.36■□□□□ 0.53
SLIRP-201ENST00000238688 NUTM2AQ8IVF1 878 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-201ENST00000238688 SIRT1Q96EB6 747 aa18.36■□□□□ 0.53
SLIRP-201ENST00000238688 KDM2AQ9Y2K7 1162 aa18.36■□□□□ 0.53
SLIRP-201ENST00000238688 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
SLIRP-201ENST00000238688 EIF3AQ14152 1382 aaKnown RBP18.34■□□□□ 0.53
SLIRP-201ENST00000238688 PXDNQ92626 1479 aa18.33■□□□□ 0.53
SLIRP-201ENST00000238688 MEX3CQ5U5Q3 659 aaKnown RBP18.33■□□□□ 0.52
SLIRP-201ENST00000238688 COL22A1Q8NFW1 1626 aaPredicted RBP18.33■□□□□ 0.52
SLIRP-201ENST00000238688 DLC1Q96QB1 1528 aa18.32■□□□□ 0.52
SLIRP-201ENST00000238688 WASHC2AQ641Q2 1341 aa18.31■□□□□ 0.52
SLIRP-201ENST00000238688 NUTM2FA1L443 756 aa18.31■□□□□ 0.52
SLIRP-201ENST00000238688 ESCO1Q5FWF5 840 aa18.31■□□□□ 0.52
SLIRP-201ENST00000238688 ZNF772Q68DY9 489 aaPredicted RBP18.3■□□□□ 0.52
SLIRP-201ENST00000238688 AFF2P51816 1311 aa18.29■□□□□ 0.52
SLIRP-201ENST00000238688 FOXO3O43524 673 aa18.28■□□□□ 0.52
SLIRP-201ENST00000238688 DDX10Q13206 875 aaKnown RBP18.28■□□□□ 0.52
SLIRP-201ENST00000238688 USP32Q8NFA0 1604 aa18.27■□□□□ 0.52
SLIRP-201ENST00000238688 NPHP3Q7Z494 1330 aa18.27■□□□□ 0.52
SLIRP-201ENST00000238688 MIER1Q8N108 512 aa18.27■□□□□ 0.52
SLIRP-201ENST00000238688 PRAM1Q96QH2 718 aa18.27■□□□□ 0.52
SLIRP-201ENST00000238688 KIF1AQ12756 1690 aa18.27■□□□□ 0.52
SLIRP-201ENST00000238688 MARF1Q9Y4F3 1742 aaKnown RBP18.26■□□□□ 0.51
SLIRP-201ENST00000238688 XPCQ01831 940 aaPredicted RBP18.26■□□□□ 0.51
SLIRP-201ENST00000238688 ADGRB2O60241 1585 aa18.25■□□□□ 0.51
SLIRP-201ENST00000238688 KIF7Q2M1P5 1343 aa18.25■□□□□ 0.51
SLIRP-201ENST00000238688 C8orf37Q96NL8 207 aa18.25■□□□□ 0.51
SLIRP-201ENST00000238688 SBNO2Q9Y2G9 1366 aa18.25■□□□□ 0.51
SLIRP-201ENST00000238688 CCER2I3L3R5 266 aa18.24■□□□□ 0.51
SLIRP-201ENST00000238688 ANP32CO43423 234 aa18.24■□□□□ 0.51
SLIRP-201ENST00000238688 SAFB2Q14151 953 aaKnown RBP eCLIP18.24■□□□□ 0.51
SLIRP-201ENST00000238688 ARHGEF28Q8N1W1 1705 aaKnown RBP18.23■□□□□ 0.51
SLIRP-201ENST00000238688 ADAMTS2O95450 1211 aa18.23■□□□□ 0.51
SLIRP-201ENST00000238688 CDCA8Q53HL2 280 aa18.23■□□□□ 0.51
SLIRP-201ENST00000238688 HIRIP3Q9BW71 556 aaPredicted RBP18.23■□□□□ 0.51
SLIRP-201ENST00000238688 ST20-MTHFSA0A0A6YYL1 179 aa18.22■□□□□ 0.51
SLIRP-201ENST00000238688 TRAK1Q9UPV9 953 aa18.22■□□□□ 0.51
SLIRP-201ENST00000238688 CDK12Q9NYV4 1490 aaPredicted RBP18.21■□□□□ 0.51
SLIRP-201ENST00000238688 RXRBP28702 533 aa18.21■□□□□ 0.51
SLIRP-201ENST00000238688 NBPF1Q3BBV0 1214 aa18.21■□□□□ 0.51
SLIRP-201ENST00000238688 PHF8Q9UPP1 1060 aa18.2■□□□□ 0.5
SLIRP-201ENST00000238688 SPATA31A3Q5VYP0 1347 aa18.2■□□□□ 0.5
SLIRP-201ENST00000238688 KTN1Q86UP2 1357 aaKnown RBP18.19■□□□□ 0.5
SLIRP-201ENST00000238688 FNBP4Q8N3X1 1017 aaPredicted RBP18.19■□□□□ 0.5
SLIRP-201ENST00000238688 NGLY1Q96IV0 654 aa18.19■□□□□ 0.5
SLIRP-201ENST00000238688 QTRT2Q9H974 415 aaKnown RBP18.19■□□□□ 0.5
SLIRP-201ENST00000238688 POGKQ9P215 609 aa18.19■□□□□ 0.5
SLIRP-201ENST00000238688 ANKARQ7Z5J8 1434 aa18.18■□□□□ 0.5
SLIRP-201ENST00000238688 TMF1P82094 1093 aa18.18■□□□□ 0.5
SLIRP-201ENST00000238688 KRT28Q7Z3Y7 464 aa18.18■□□□□ 0.5
SLIRP-201ENST00000238688 PRR36Q9H6K5 1346 aa18.18■□□□□ 0.5
SLIRP-201ENST00000238688 RGS12O14924 1447 aa18.16■□□□□ 0.5
SLIRP-201ENST00000238688 TRPM3Q9HCF6 1732 aaPredicted RBP18.16■□□□□ 0.5
SLIRP-201ENST00000238688 RBM6P78332 1123 aaKnown RBP18.16■□□□□ 0.5
SLIRP-201ENST00000238688 TESK2Q96S53 571 aa18.16■□□□□ 0.5
SLIRP-201ENST00000238688 MINK1Q8N4C8 1332 aaPredicted RBP18.16■□□□□ 0.5
SLIRP-201ENST00000238688 ABCA3Q99758 1704 aa18.15■□□□□ 0.5
SLIRP-201ENST00000238688 BCL9LQ86UU0 1499 aa18.15■□□□□ 0.5
SLIRP-201ENST00000238688 C11orf95C9JLR9 678 aaPredicted RBP18.15■□□□□ 0.5
SLIRP-201ENST00000238688 USP21Q9UK80 565 aa18.15■□□□□ 0.5
SLIRP-201ENST00000238688 ATRNO75882 1429 aa18.15■□□□□ 0.5
SLIRP-201ENST00000238688 TULP4Q9NRJ4 1543 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms