RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 FILIP1LQ4L180 1135 aa7.28□□□□□ -1.24
VPS13D-201ENST00000011700 SMG6Q86US8 1419 aaKnown RBP7.28□□□□□ -1.24
VPS13D-201ENST00000011700 PLEKHH1Q9ULM0 1364 aa7.28□□□□□ -1.24
VPS13D-201ENST00000011700 GBP3Q9H0R5 595 aa7.28□□□□□ -1.24
VPS13D-201ENST00000011700 MAP9Q49MG5 647 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 STK11IPQ8N1F8 1099 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 CCDC112Q8NEF3 446 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 DDX11Q96FC9 970 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 ZBTB7CA1YPR0 619 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 DHX37Q8IY37 1157 aaKnown RBP7.27□□□□□ -1.25
VPS13D-201ENST00000011700 KINO60870 393 aaKnown RBP7.27□□□□□ -1.25
VPS13D-201ENST00000011700 ERC1Q8IUD2 1116 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 KCNH8Q96L42 1107 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 EHBP1L1Q8N3D4 1523 aa7.27□□□□□ -1.25
VPS13D-201ENST00000011700 GBP2P32456 591 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 OFD1O75665 1012 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 SETD1BQ9UPS6 1966 aaKnown RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 PPM1EQ8WY54 764 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 AKNAQ7Z591 1439 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 C1orf141Q5JVX7 400 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 ZNF396Q96N95 335 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 DHX29Q7Z478 1369 aaKnown RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 RRP9O43818 475 aaKnown RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 CACNA1FO60840 1977 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 BRD4O60885 1362 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 CDKL5O76039 1030 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 SRCIN1Q9C0H9 1055 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 CBFA2T2O43439 604 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 FRAT2O75474 233 aaPredicted RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 APPP05067 770 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 RALYLQ86SE5 291 aaKnown RBP7.26□□□□□ -1.25
VPS13D-201ENST00000011700 DYDC1Q8WWB3 177 aa7.26□□□□□ -1.25
VPS13D-201ENST00000011700 LUZP1Q86V48 1076 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 SLKQ9H2G2 1235 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-201ENST00000011700 CTDP1Q9Y5B0 961 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-201ENST00000011700 SLC26A8Q96RN1 970 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 NASPP49321 788 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-201ENST00000011700 SYCP1Q15431 976 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 LMOD2Q6P5Q4 547 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 CTTNBP2Q8WZ74 1663 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 SPATA24Q86W54 205 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 FAM13BQ9NYF5 915 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 HOOK3Q86VS8 718 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 MPHOSPH9Q99550 1183 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 CFAP45Q9UL16 551 aa7.25□□□□□ -1.25
VPS13D-201ENST00000011700 CIZ1Q9ULV3 898 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-201ENST00000011700 C9orf78Q9NZ63 289 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 AEBP1Q8IUX7 1158 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 SMC2O95347 1197 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 DZIP1LQ8IYY4 767 aaKnown RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 ANKRD30BQ9BXX2 1392 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 TTC5Q8N0Z6 440 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 USP47Q96K76 1375 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 TUBB4AP04350 444 aa7.24□□□□□ -1.25
VPS13D-201ENST00000011700 GTF2E1P29083 439 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 CCAR2Q8N163 923 aaKnown RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 SEPT7Q16181 437 aaKnown RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 GZF1Q9H116 711 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-201ENST00000011700 CC2D2AQ9P2K1 1620 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CETN2P41208 172 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CCDC141Q6ZP82 1450 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 TRHP20396 242 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 GNAI1P63096 354 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 PCMTD1Q96MG8 357 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 PYM1Q9BRP8 204 aaKnown RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CHMP3Q9Y3E7 222 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CCDC192P0DO97 292 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 AMPHP49418 695 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CCDC91Q7Z6B0 441 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 VPS37DQ86XT2 251 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 MAGEC2Q9UBF1 373 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 HFM1A2PYH4 1435 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 SOGA1O94964 1423 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 SMC3Q9UQE7 1217 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 WDHD1O75717 1129 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 PKD2Q13563 968 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 ZNF287Q9HBT7 754 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 GOLGA6L9A6NEM1 432 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 VPS53Q5VIR6 699 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 CCAR1Q8IX12 1150 aaKnown RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 COG3Q96JB2 828 aa7.23□□□□□ -1.25
VPS13D-201ENST00000011700 IMMTQ16891 758 aaKnown RBP7.23□□□□□ -1.25
VPS13D-201ENST00000011700 IFT57Q9NWB7 429 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 V9GYY5 206 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 PPP1R12BO60237 982 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 BICD2Q8TD16 824 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 POTEB2H3BUK9 544 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 IFIT2P09913 472 aaKnown RBP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 EIF2AK4Q9P2K8 1649 aaKnown RBP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 CNTROBQ8N137 903 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 STAMBPO95630 424 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 FMNL3Q8IVF7 1028 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 TEFQ10587 303 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 HSP90AB2PQ58FF8 381 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 MICALCLQ6ZW33 695 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 NEFHP12036 1026 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 MCM5P33992 734 aa7.22□□□□□ -1.25
VPS13D-201ENST00000011700 RRP1P56182 461 aaKnown RBP7.22□□□□□ -1.25
VPS13D-201ENST00000011700 ZNF710Q8N1W2 664 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms