RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W UBC4P15731 148 aa2.6□□□□□ -1.99
USA1YML029W NHP2P32495 156 aaPredicted RBP2.6□□□□□ -1.99
USA1YML029W YNL198CP40166 100 aa2.6□□□□□ -1.99
USA1YML029W SBH1P52870 82 aa2.59□□□□□ -1.99
USA1YML029W SMP1P38128 452 aa2.59□□□□□ -2
USA1YML029W AIM19P40502 157 aa2.59□□□□□ -2
USA1YML029W YGL193CP53097 103 aa2.59□□□□□ -2
USA1YML029W ICY1Q04329 127 aa2.59□□□□□ -2
USA1YML029W Q0032Q9ZZX7 96 aa2.59□□□□□ -2
USA1YML029W IGD1P43598 195 aa2.58□□□□□ -2
USA1YML029W IRC21Q04772 201 aa2.58□□□□□ -2
USA1YML029W MDN1Q12019 4910 aaKnown RBP2.57□□□□□ -2
USA1YML029W YNL277W-AQ3E7Z0 62 aa2.57□□□□□ -2
USA1YML029W YNL162W-AQ3E7A8 72 aa2.56□□□□□ -2
USA1YML029W YNL042W-BQ3E7Z2 85 aa2.56□□□□□ -2
USA1YML029W KSH1Q8TGJ3 72 aa2.56□□□□□ -2
USA1YML029W HUR1P45820 110 aa2.56□□□□□ -2
USA1YML029W SPG1P50088 95 aa2.56□□□□□ -2
USA1YML029W YOR034C-AQ3E735 80 aa2.55□□□□□ -2
USA1YML029W YGR121W-AQ3E816 71 aa2.55□□□□□ -2
USA1YML029W YLR236CA0A023PZG4 107 aa2.54□□□□□ -2
USA1YML029W YOR268CQ08734 132 aa2.54□□□□□ -2
USA1YML029W MIC10Q96VH5 97 aa2.54□□□□□ -2
USA1YML029W YCR050CP25630 102 aa2.53□□□□□ -2
USA1YML029W TSC3Q3E790 80 aa2.53□□□□□ -2
USA1YML029W KTI11Q3E840 82 aa2.53□□□□□ -2
USA1YML029W MSA2P36157 363 aa2.53□□□□□ -2
USA1YML029W YBR230W-AQ3E762 66 aa2.53□□□□□ -2
USA1YML029W DDR48P18899 430 aaKnown RBP2.52□□□□□ -2.01
USA1YML029W FYV5P25585 152 aa2.52□□□□□ -2.01
USA1YML029W EDC2P40023 145 aaPredicted RBP2.52□□□□□ -2.01
USA1YML029W YJR085CP47131 105 aaKnown RBP2.52□□□□□ -2.01
USA1YML029W ATX1P38636 73 aa2.51□□□□□ -2.01
USA1YML029W MPC3P53311 146 aa2.51□□□□□ -2.01
USA1YML029W RSM19P53733 91 aaPredicted RBP2.51□□□□□ -2.01
USA1YML029W YLR412C-AQ3E742 68 aa2.51□□□□□ -2.01
USA1YML029W YJL127C-BQ3E828 52 aa2.51□□□□□ -2.01
USA1YML029W DDR2P89113 61 aa2.51□□□□□ -2.01
USA1YML029W YCR085WP25650 117 aa2.5□□□□□ -2.01
USA1YML029W DSE2P38844 325 aa2.5□□□□□ -2.01
USA1YML029W SKI6P46948 246 aaPredicted RBP2.5□□□□□ -2.01
USA1YML029W YHL042WP38729 150 aa2.5□□□□□ -2.01
USA1YML029W YFR032C-BQ8TGU2 87 aa2.5□□□□□ -2.01
USA1YML029W RPA12P32529 125 aaKnown RBP2.49□□□□□ -2.01
USA1YML029W YLR156WP0CE96 114 aa2.49□□□□□ -2.01
USA1YML029W YLR159WP0CE97 114 aa2.49□□□□□ -2.01
USA1YML029W YLR161WP0CE98 114 aa2.49□□□□□ -2.01
USA1YML029W YJR107C-AP0CT86 78 aa2.49□□□□□ -2.01
USA1YML029W YDR119W-AQ2V2P9 66 aa2.48□□□□□ -2.01
USA1YML029W BET1P22804 142 aa2.47□□□□□ -2.01
USA1YML029W FYV12Q08559 129 aa2.47□□□□□ -2.01
USA1YML029W YCR043CP25361 127 aa2.47□□□□□ -2.01
USA1YML029W BSC4P53841 131 aa2.47□□□□□ -2.01
USA1YML029W TDA8Q6B2U8 126 aa2.47□□□□□ -2.01
USA1YML029W ATP18P81450 59 aa2.46□□□□□ -2.01
USA1YML029W YOR072WQ08486 104 aa2.46□□□□□ -2.01
USA1YML029W YAL063C-AQ3E791 96 aa2.46□□□□□ -2.01
USA1YML029W KRE1P17260 313 aa2.46□□□□□ -2.02
USA1YML029W YHR007C-AQ07074 71 aa2.46□□□□□ -2.02
USA1YML029W YER078W-AQ3E7A2 54 aa2.46□□□□□ -2.02
USA1YML029W YBL008W-AQ3E821 79 aa2.46□□□□□ -2.02
USA1YML029W RAD6P06104 172 aa2.45□□□□□ -2.02
USA1YML029W RPL36BO14455 100 aaKnown RBP2.45□□□□□ -2.02
USA1YML029W YFR009W-AP0C5M9 85 aa2.45□□□□□ -2.02
USA1YML029W YHL018WP38744 120 aaPredicted RBP2.45□□□□□ -2.02
USA1YML029W YFL067WP43537 175 aa2.44□□□□□ -2.02
USA1YML029W YGL149WP53116 101 aa2.44□□□□□ -2.02
USA1YML029W YDR381C-AQ3E6R5 114 aa2.44□□□□□ -2.02
USA1YML029W TDA2P40045 126 aa2.44□□□□□ -2.02
USA1YML029W HHF1P02309 103 aaKnown RBP2.43□□□□□ -2.02
USA1YML029W YEL045CP32616 141 aa2.43□□□□□ -2.02
USA1YML029W YGR164WP53291 111 aa2.43□□□□□ -2.02
USA1YML029W YML100W-AQ8TGT0 57 aa2.43□□□□□ -2.02
USA1YML029W YOL014WQ08110 124 aa2.42□□□□□ -2.02
USA1YML029W YDR010CQ12426 110 aa2.42□□□□□ -2.02
USA1YML029W EMC6Q12431 108 aa2.42□□□□□ -2.02
USA1YML029W RSM18P40033 138 aa2.42□□□□□ -2.02
USA1YML029W ATP20Q12233 115 aa2.42□□□□□ -2.02
USA1YML029W YMR230W-AQ3E7B5 62 aa2.41□□□□□ -2.02
USA1YML029W YOL097W-AQ3E7Y9 61 aa2.41□□□□□ -2.02
USA1YML029W YHR213W-BQ8TGK1 99 aa2.41□□□□□ -2.02
USA1YML029W ICS3P47034 131 aa2.41□□□□□ -2.02
USA1YML029W YBR027CP38220 110 aa2.4□□□□□ -2.02
USA1YML029W EDC1P53080 175 aaPredicted RBP2.4□□□□□ -2.02
USA1YML029W CMC4Q3E7A9 73 aa2.4□□□□□ -2.02
USA1YML029W YLR157W-DP0CE99 70 aa2.4□□□□□ -2.03
USA1YML029W YJL133C-AQ3E7A3 74 aa2.4□□□□□ -2.03
USA1YML029W COX23P38824 151 aa2.39□□□□□ -2.03
USA1YML029W YJL197C-AP0C5P0 93 aa2.39□□□□□ -2.03
USA1YML029W RPL38P49167 78 aaKnown RBP2.38□□□□□ -2.03
USA1YML029W ECM19Q06011 112 aa2.38□□□□□ -2.03
USA1YML029W YLR162WQ06235 118 aa2.38□□□□□ -2.03
USA1YML029W YOR381W-AQ3E804 55 aa2.37□□□□□ -2.03
USA1YML029W YHL005CP38752 130 aa2.37□□□□□ -2.03
USA1YML029W YFL041W-AQ3E817 63 aa2.37□□□□□ -2.03
USA1YML029W COX7P10174 60 aa2.36□□□□□ -2.03
USA1YML029W TOM6P33448 61 aa2.36□□□□□ -2.03
USA1YML029W YER187WP40102 141 aa2.36□□□□□ -2.03
USA1YML029W YSY6P38374 65 aa2.34□□□□□ -2.03
USA1YML029W YLR285C-AQ3E771 56 aa2.34□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 64.1 ms