RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C MPC3P53311 146 aa3.58□□□□□ -1.84
CAF4YKR036C COX14P39103 70 aa3.57□□□□□ -1.84
CAF4YKR036C YLL006W-AQ3E814 58 aa3.57□□□□□ -1.84
CAF4YKR036C YGR035W-AQ45U48 73 aa3.57□□□□□ -1.84
CAF4YKR036C YBL081WP38180 368 aaKnown RBP3.56□□□□□ -1.84
CAF4YKR036C YHL005CP38752 130 aa3.56□□□□□ -1.84
CAF4YKR036C YMR295CQ03559 197 aa3.56□□□□□ -1.84
CAF4YKR036C YFR009W-AP0C5M9 85 aa3.55□□□□□ -1.84
CAF4YKR036C RPL38P49167 78 aaKnown RBP3.55□□□□□ -1.84
CAF4YKR036C YGR045CP53229 120 aa3.55□□□□□ -1.84
CAF4YKR036C YPR013CQ12145 317 aa3.55□□□□□ -1.84
CAF4YKR036C CRC1Q12289 327 aa3.55□□□□□ -1.84
CAF4YKR036C YPS5P53057 165 aa3.54□□□□□ -1.84
CAF4YKR036C YGL034CP53186 121 aa3.54□□□□□ -1.84
CAF4YKR036C YNL146C-AQ3E7Z1 64 aa3.54□□□□□ -1.84
CAF4YKR036C YBR219CP38317 127 aa3.53□□□□□ -1.84
CAF4YKR036C YER135CP40082 130 aa3.53□□□□□ -1.84
CAF4YKR036C YMR122CQ03879 124 aa3.53□□□□□ -1.84
CAF4YKR036C YER188C-AP0C0V2 99 aa3.52□□□□□ -1.85
CAF4YKR036C RPS30AP0CX33 63 aaKnown RBP3.52□□□□□ -1.85
CAF4YKR036C RPS30BP0CX34 63 aaKnown RBP3.52□□□□□ -1.85
CAF4YKR036C YKL065W-AQ2V2P2 73 aa3.52□□□□□ -1.85
CAF4YKR036C VAM10Q08474 114 aa3.52□□□□□ -1.85
CAF4YKR036C YOR376W-AQ3E805 51 aa3.52□□□□□ -1.85
CAF4YKR036C YOR011W-AQ3E807 68 aa3.52□□□□□ -1.85
CAF4YKR036C TDA2P40045 126 aa3.51□□□□□ -1.85
CAF4YKR036C TOS8P53147 276 aa3.51□□□□□ -1.85
CAF4YKR036C YEL045CP32616 141 aa3.5□□□□□ -1.85
CAF4YKR036C YBR144CP34215 104 aa3.5□□□□□ -1.85
CAF4YKR036C OST5Q92316 86 aa3.5□□□□□ -1.85
CAF4YKR036C YMR244WQ04018 355 aa3.49□□□□□ -1.85
CAF4YKR036C YOL014WQ08110 124 aa3.49□□□□□ -1.85
CAF4YKR036C YML100W-AQ8TGT0 57 aa3.49□□□□□ -1.85
CAF4YKR036C PMP3P87284 55 aa3.48□□□□□ -1.85
CAF4YKR036C YPR153WQ06537 140 aa3.48□□□□□ -1.85
CAF4YKR036C TSC3Q3E790 80 aa3.48□□□□□ -1.85
CAF4YKR036C YMR122W-AQ3E842 84 aa3.48□□□□□ -1.85
CAF4YKR036C DIF1O13577 133 aa3.48□□□□□ -1.85
CAF4YKR036C RPL29P05747 59 aaPredicted RBP3.47□□□□□ -1.85
CAF4YKR036C YCR041WP37265 110 aa3.47□□□□□ -1.85
CAF4YKR036C LIP1Q03579 150 aa3.46□□□□□ -1.86
CAF4YKR036C HOT13P36078 116 aa3.45□□□□□ -1.86
CAF4YKR036C COX23P38824 151 aa3.45□□□□□ -1.86
CAF4YKR036C YPR010C-AA5Z2X5 72 aa3.44□□□□□ -1.86
CAF4YKR036C MRPS8Q03799 155 aa3.44□□□□□ -1.86
CAF4YKR036C YGL193CP53097 103 aa3.43□□□□□ -1.86
CAF4YKR036C YOL013W-AP0C272 63 aaPredicted RBP3.42□□□□□ -1.86
CAF4YKR036C EDC2P40023 145 aaPredicted RBP3.42□□□□□ -1.86
CAF4YKR036C MDN1Q12019 4910 aaKnown RBP3.42□□□□□ -1.86
CAF4YKR036C YNL162W-AQ3E7A8 72 aa3.42□□□□□ -1.86
CAF4YKR036C RPS11AP0CX47 156 aaKnown RBP3.41□□□□□ -1.86
CAF4YKR036C RPS11BP0CX48 156 aaKnown RBP3.41□□□□□ -1.86
CAF4YKR036C YIL102CP40488 101 aa3.41□□□□□ -1.86
CAF4YKR036C MVB12P42939 101 aa3.41□□□□□ -1.86
CAF4YKR036C YDL241WQ07738 123 aa3.41□□□□□ -1.86
CAF4YKR036C YLR122CQ12312 125 aa3.41□□□□□ -1.86
CAF4YKR036C YHR213W-BQ8TGK1 99 aa3.4□□□□□ -1.86
CAF4YKR036C FYV5P25585 152 aa3.4□□□□□ -1.87
CAF4YKR036C YBR126W-AQ8TGU7 68 aa3.4□□□□□ -1.87
CAF4YKR036C YDR010CQ12426 110 aa3.39□□□□□ -1.87
CAF4YKR036C YAL064WP39711 94 aa3.38□□□□□ -1.87
CAF4YKR036C SPG1P50088 95 aa3.38□□□□□ -1.87
CAF4YKR036C YBR230W-AQ3E762 66 aa3.38□□□□□ -1.87
CAF4YKR036C TAR1Q8TGM6 124 aa3.38□□□□□ -1.87
CAF4YKR036C YHR212W-AP0CX91 67 aa3.37□□□□□ -1.87
CAF4YKR036C HOR7Q05827 59 aa3.37□□□□□ -1.87
CAF4YKR036C YJL133C-AQ3E7A3 74 aa3.37□□□□□ -1.87
CAF4YKR036C SPC1P46965 94 aa3.36□□□□□ -1.87
CAF4YKR036C YIL156W-BQ2V2P4 73 aa3.36□□□□□ -1.87
CAF4YKR036C HUB1Q6Q546 73 aa3.36□□□□□ -1.87
CAF4YKR036C YCR095W-AQ3E787 52 aa3.36□□□□□ -1.87
CAF4YKR036C YJL127C-BQ3E828 52 aa3.36□□□□□ -1.87
CAF4YKR036C YAR023CD6VPM8 179 aa3.35□□□□□ -1.87
CAF4YKR036C RPC10P40422 70 aa3.35□□□□□ -1.87
CAF4YKR036C IGD1P43598 195 aa3.35□□□□□ -1.87
CAF4YKR036C SDH6Q3E785 79 aa3.35□□□□□ -1.87
CAF4YKR036C YBL039W-BP0C268 59 aa3.34□□□□□ -1.87
CAF4YKR036C ECM19Q06011 112 aa3.34□□□□□ -1.87
CAF4YKR036C YLR157W-DP0CE99 70 aa3.34□□□□□ -1.88
CAF4YKR036C YNL042W-BQ3E7Z2 85 aa3.34□□□□□ -1.88
CAF4YKR036C YLR307C-AQ3E825 87 aa3.34□□□□□ -1.88
CAF4YKR036C YMR001C-AQ8TGS9 76 aa3.34□□□□□ -1.88
CAF4YKR036C AQY2P0CD90 149 aa3.33□□□□□ -1.88
CAF4YKR036C YCR001WP25347 104 aa3.33□□□□□ -1.88
CAF4YKR036C RDS3Q06835 107 aaPredicted RBP3.33□□□□□ -1.88
CAF4YKR036C YHR125WP38831 101 aa3.32□□□□□ -1.88
CAF4YKR036C DDR48P18899 430 aaKnown RBP3.32□□□□□ -1.88
CAF4YKR036C YGR240C-AQ3E786 66 aa3.32□□□□□ -1.88
CAF4YKR036C YGL149WP53116 101 aa3.31□□□□□ -1.88
CAF4YKR036C YCR043CP25361 127 aa3.3□□□□□ -1.88
CAF4YKR036C ATP17Q06405 101 aa3.3□□□□□ -1.88
CAF4YKR036C AUA1P32450 94 aa3.29□□□□□ -1.88
CAF4YKR036C QCR10P37299 77 aa3.29□□□□□ -1.88
CAF4YKR036C YBR027CP38220 110 aa3.27□□□□□ -1.89
CAF4YKR036C YAR064WP39563 99 aa3.27□□□□□ -1.89
CAF4YKR036C BSC4P53841 131 aa3.27□□□□□ -1.89
CAF4YKR036C MRX7P53869 86 aa3.27□□□□□ -1.89
CAF4YKR036C DDR2P89113 61 aa3.26□□□□□ -1.89
CAF4YKR036C RPL33AP05744 107 aaKnown RBP3.25□□□□□ -1.89
CAF4YKR036C RPL33BP41056 107 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 82.2 ms