RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	HPA2	Q06592	156 aa		1.08	□□□□□ -2.24
UBP1	YDL122W	MRP17	P28778	131 aa		1.07	□□□□□ -2.24
UBP1	YDL122W	MIC10	Q96VH5	97 aa		1.07	□□□□□ -2.24
UBP1	YDL122W	SNN1	P48232	102 aa		1.07	□□□□□ -2.24
UBP1	YDL122W	YNL122C	P53921	115 aa	Predicted RBP	1.07	□□□□□ -2.24
UBP1	YDL122W	SEN15	Q04675	128 aa		1.07	□□□□□ -2.24
UBP1	YDL122W	YBR200W-A	Q3E755	54 aa		1.07	□□□□□ -2.24
UBP1	YDL122W	YPR203W	Q08994	102 aa		1.06	□□□□□ -2.24
UBP1	YDL122W	COA6	Q3E846	104 aa		1.06	□□□□□ -2.24
UBP1	YDL122W	YIL163C	P40448	117 aa		1.06	□□□□□ -2.24
UBP1	YDL122W	YDR210W	Q03482	75 aa		1.06	□□□□□ -2.24
UBP1	YDL122W	PAU19	P0CE85	124 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	PAU3	P25610	124 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	COX23	P38824	151 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	IRC21	Q04772	201 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	YMR175W-A	Q3E766	64 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	ENV10	Q99382	181 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	AIM4	P38305	123 aa	Predicted RBP	1.05	□□□□□ -2.24
UBP1	YDL122W	MIC27	P50945	234 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	YLR342W-A	Q3E810	57 aa		1.05	□□□□□ -2.24
UBP1	YDL122W	YLR363W-A	Q3E747	85 aa		1.04	□□□□□ -2.24
UBP1	YDL122W	AQY2	P0CD90	149 aa		1.03	□□□□□ -2.24
UBP1	YDL122W	LSM2	P38203	95 aa	Known RBP	1.03	□□□□□ -2.24
UBP1	YDL122W	SWM2	P40342	146 aa		1.03	□□□□□ -2.24
UBP1	YDL122W	CWP2	P43497	92 aa		1.03	□□□□□ -2.24
UBP1	YDL122W	YMR082C	Q04276	118 aa		1.03	□□□□□ -2.25
UBP1	YDL122W	POC4	Q12245	148 aa	Predicted RBP	1.03	□□□□□ -2.25
UBP1	YDL122W	COX7	P10174	60 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	PAU16	P35994	123 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	CYB5	P40312	120 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	PAU15	P40585	124 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	YJL009W	P47078	108 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	YLR285C-A	Q3E771	56 aa		1.02	□□□□□ -2.25
UBP1	YDL122W	HMRA2	P0CY13	119 aa		1.01	□□□□□ -2.25
UBP1	YDL122W	YGR121W-A	Q3E816	71 aa		1.01	□□□□□ -2.25
UBP1	YDL122W	YAR064W	P39563	99 aa		1.01	□□□□□ -2.25
UBP1	YDL122W	MSL1	P40567	111 aa	Predicted RBP	1.01	□□□□□ -2.25
UBP1	YDL122W	RSM19	P53733	91 aa	Predicted RBP	1.01	□□□□□ -2.25
UBP1	YDL122W	Q0032	Q9ZZX7	96 aa		1.01	□□□□□ -2.25
UBP1	YDL122W	SRB6	P32570	121 aa		1	□□□□□ -2.25
UBP1	YDL122W	YHL005C	P38752	130 aa		1	□□□□□ -2.25
UBP1	YDL122W	ICS3	P47034	131 aa		1	□□□□□ -2.25
UBP1	YDL122W	YOR072W	Q08486	104 aa		1	□□□□□ -2.25
UBP1	YDL122W	YDR042C	Q03205	200 aa		0.99	□□□□□ -2.25
UBP1	YDL122W	LSM6	Q06406	86 aa	Known RBP	0.99	□□□□□ -2.25
UBP1	YDL122W	YGL194C-A	Q2V2P6	80 aa		0.99	□□□□□ -2.25
UBP1	YDL122W	HMRA1	P0CY11	126 aa		0.98	□□□□□ -2.25
UBP1	YDL122W	RPS22A	P0C0W1	130 aa	Known RBP	0.98	□□□□□ -2.25
UBP1	YDL122W	YIL102C	P40488	101 aa		0.98	□□□□□ -2.25
UBP1	YDL122W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.98	□□□□□ -2.25
UBP1	YDL122W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.97	□□□□□ -2.25
UBP1	YDL122W	PAU5	P43575	122 aa		0.97	□□□□□ -2.25
UBP1	YDL122W	MGR2	Q02889	113 aa		0.97	□□□□□ -2.25
UBP1	YDL122W	SUS1	Q6WNK7	96 aa		0.97	□□□□□ -2.25
UBP1	YDL122W	MRPL31	P14063	131 aa	Predicted RBP	0.97	□□□□□ -2.25
UBP1	YDL122W	YHR173C	P38864	112 aa		0.96	□□□□□ -2.26
UBP1	YDL122W	GCV3	P39726	170 aa	Predicted RBP	0.96	□□□□□ -2.26
UBP1	YDL122W	YCR095W-A	Q3E787	52 aa		0.96	□□□□□ -2.26
UBP1	YDL122W	YHR213W-A	Q8TGT4	77 aa		0.96	□□□□□ -2.26
UBP1	YDL122W	MRPS12	P53732	153 aa		0.96	□□□□□ -2.26
UBP1	YDL122W	YMR007W	Q03675	126 aa		0.96	□□□□□ -2.26
UBP1	YDL122W	RSM18	P40033	138 aa		0.95	□□□□□ -2.26
UBP1	YDL122W	YBL039W-B	P0C268	59 aa		0.95	□□□□□ -2.26
UBP1	YDL122W	QCR9	P22289	66 aa		0.95	□□□□□ -2.26
UBP1	YDL122W	MVB12	P42939	101 aa		0.94	□□□□□ -2.26
UBP1	YDL122W	HUA1	P40325	198 aa		0.94	□□□□□ -2.26
UBP1	YDL122W	YKL068W-A	Q3E826	78 aa		0.94	□□□□□ -2.26
UBP1	YDL122W	ICY1	Q04329	127 aa		0.93	□□□□□ -2.26
UBP1	YDL122W	YPL038W-A	Q3E7B4	63 aa		0.93	□□□□□ -2.26
UBP1	YDL122W	YMR141C	P40211	102 aa		0.92	□□□□□ -2.26
UBP1	YDL122W	YKL023C-A	Q2V2P3	75 aa		0.92	□□□□□ -2.26
UBP1	YDL122W	COA2	Q3E823	68 aa		0.92	□□□□□ -2.26
UBP1	YDL122W	YAL065C	O13511	128 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	PAU6	P0CE90	120 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	PAU18	P0CE91	120 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	YHR213W-B	Q8TGK1	99 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	HHY1	P39982	102 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	YJR128W	P47162	119 aa		0.91	□□□□□ -2.26
UBP1	YDL122W	DDR2	P89113	61 aa		0.9	□□□□□ -2.26
UBP1	YDL122W	YLR255C	O13574	117 aa		0.9	□□□□□ -2.27
UBP1	YDL122W	MRX7	P53869	86 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	YNL190W	P53872	204 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	YCR085W	P25650	117 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	NHP2	P32495	156 aa	Predicted RBP	0.89	□□□□□ -2.27
UBP1	YDL122W	YOR105W	Q08504	108 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	COX19	Q3E731	98 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	YNR034W-A	Q3E841	98 aa		0.89	□□□□□ -2.27
UBP1	YDL122W	RPA12	P32529	125 aa	Known RBP	0.88	□□□□□ -2.27
UBP1	YDL122W	PAU1	P0CE88	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU14	P0CE89	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU8	P0CE92	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU11	P0CE93	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU13	P38725	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	SHU1	P38751	150 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU10	Q03050	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU9	Q3E770	120 aa		0.88	□□□□□ -2.27
UBP1	YDL122W	PAU4	P53427	120 aa		0.87	□□□□□ -2.27
UBP1	YDL122W	PAU20	Q08322	120 aa		0.87	□□□□□ -2.27
UBP1	YDL122W	YBR292C	P38357	123 aa		0.87	□□□□□ -2.27
UBP1	YDL122W	RPL37A	P49166	88 aa	Known RBP	0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 44.3 ms