RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C RPL38P49167 78 aaKnown RBP4.8□□□□□ -1.64
TDP1YBR223C EDC1P53080 175 aaPredicted RBP4.8□□□□□ -1.64
TDP1YBR223C RSM19P53733 91 aaPredicted RBP4.8□□□□□ -1.64
TDP1YBR223C YBR230W-AQ3E762 66 aa4.8□□□□□ -1.64
TDP1YBR223C RPL11AP0C0W9 174 aaKnown RBP4.79□□□□□ -1.64
TDP1YBR223C SFT1P43682 97 aa4.79□□□□□ -1.64
TDP1YBR223C RPL11BQ3E757 174 aaPredicted RBP4.79□□□□□ -1.64
TDP1YBR223C UTP20P35194 2493 aaKnown RBP4.79□□□□□ -1.64
TDP1YBR223C AUA1P32450 94 aa4.79□□□□□ -1.64
TDP1YBR223C TDA2P40045 126 aa4.79□□□□□ -1.64
TDP1YBR223C YHL018WP38744 120 aaPredicted RBP4.78□□□□□ -1.64
TDP1YBR223C YDR029WQ12111 104 aa4.78□□□□□ -1.64
TDP1YBR223C YGL041C-BQ3E750 60 aa4.78□□□□□ -1.64
TDP1YBR223C YPL038W-AQ3E7B4 63 aa4.78□□□□□ -1.64
TDP1YBR223C BET1P22804 142 aa4.77□□□□□ -1.65
TDP1YBR223C YRA2P36036 203 aaKnown RBP RIP-Chip data4.77□□□□□ -1.65not detected
TDP1YBR223C YNL042W-BQ3E7Z2 85 aa4.77□□□□□ -1.65
TDP1YBR223C YLR307C-AQ3E825 87 aa4.77□□□□□ -1.65
TDP1YBR223C DYN1P36022 4092 aa4.76□□□□□ -1.65
TDP1YBR223C YLR156WP0CE96 114 aa4.75□□□□□ -1.65
TDP1YBR223C YLR159WP0CE97 114 aa4.75□□□□□ -1.65
TDP1YBR223C YLR161WP0CE98 114 aa4.75□□□□□ -1.65
TDP1YBR223C ICS3P47034 131 aa4.75□□□□□ -1.65
TDP1YBR223C RSM18P40033 138 aa4.74□□□□□ -1.65
TDP1YBR223C ECM12O13529 151 aa4.73□□□□□ -1.65
TDP1YBR223C YPL080CQ02826 108 aa4.73□□□□□ -1.65
TDP1YBR223C TOM6P33448 61 aa4.72□□□□□ -1.65
TDP1YBR223C YHR213W-BQ8TGK1 99 aa4.72□□□□□ -1.65
TDP1YBR223C SPT4P32914 102 aaPredicted RBP4.71□□□□□ -1.66
TDP1YBR223C PEX22P39718 180 aa4.71□□□□□ -1.66
TDP1YBR223C EDC2P40023 145 aaPredicted RBP4.71□□□□□ -1.66
TDP1YBR223C ATP20Q12233 115 aa4.71□□□□□ -1.66
TDP1YBR223C YKL183C-AQ3E765 70 aa4.71□□□□□ -1.66
TDP1YBR223C COX23P38824 151 aa4.7□□□□□ -1.66
TDP1YBR223C DDR2P89113 61 aa4.7□□□□□ -1.66
TDP1YBR223C RPL36BO14455 100 aaKnown RBP4.69□□□□□ -1.66
TDP1YBR223C YGL193CP53097 103 aa4.69□□□□□ -1.66
TDP1YBR223C YIR021W-AQ3E739 70 aa4.69□□□□□ -1.66
TDP1YBR223C BSC4P53841 131 aa4.68□□□□□ -1.66
TDP1YBR223C YHR007C-AQ07074 71 aa4.68□□□□□ -1.66
TDP1YBR223C YJL133C-AQ3E7A3 74 aa4.68□□□□□ -1.66
TDP1YBR223C YER039C-AP0CD97 72 aa4.68□□□□□ -1.66
TDP1YBR223C YER187WP40102 141 aa4.67□□□□□ -1.66
TDP1YBR223C YOL014WQ08110 124 aa4.67□□□□□ -1.66
TDP1YBR223C YOR072WQ08486 104 aa4.67□□□□□ -1.66
TDP1YBR223C MRP10O75012 95 aa4.65□□□□□ -1.66
TDP1YBR223C YDR034C-AP0C289 58 aa4.65□□□□□ -1.66
TDP1YBR223C YOR314WQ12506 109 aa4.65□□□□□ -1.66
TDP1YBR223C TDA8Q6B2U8 126 aa4.64□□□□□ -1.67
TDP1YBR223C GIS2P53849 153 aaKnown RBP RIP-Chip data4.64□□□□□ -1.67not detected
TDP1YBR223C YPR195CQ06594 109 aa4.64□□□□□ -1.67
TDP1YBR223C YLR415CO13578 112 aa4.63□□□□□ -1.67
TDP1YBR223C YCR050CP25630 102 aa4.63□□□□□ -1.67
TDP1YBR223C AIM4P38305 123 aaPredicted RBP4.63□□□□□ -1.67
TDP1YBR223C ECM19Q06011 112 aa4.63□□□□□ -1.67
TDP1YBR223C YKL069WP36088 180 aa4.62□□□□□ -1.67
TDP1YBR223C YDR246W-AQ3E763 66 aa4.62□□□□□ -1.67
TDP1YBR223C NOP10Q6Q547 58 aaPredicted RBP4.61□□□□□ -1.67
TDP1YBR223C YLR162WQ06235 118 aa4.6□□□□□ -1.67
TDP1YBR223C MIC10Q96VH5 97 aa4.6□□□□□ -1.67
TDP1YBR223C YEL045CP32616 141 aa4.59□□□□□ -1.67
TDP1YBR223C YBR182C-AQ8TGU6 64 aa4.59□□□□□ -1.67
TDP1YBR223C YGR121W-AQ3E816 71 aa4.57□□□□□ -1.68
TDP1YBR223C HOT13P36078 116 aa4.56□□□□□ -1.68
TDP1YBR223C SAP30P38429 201 aa4.56□□□□□ -1.68
TDP1YBR223C YMR230W-AQ3E7B5 62 aa4.56□□□□□ -1.68
TDP1YBR223C YIL102CP40488 101 aa4.55□□□□□ -1.68
TDP1YBR223C YDR182W-AQ3E796 67 aa4.54□□□□□ -1.68
TDP1YBR223C RPL36AP05745 100 aaPredicted RBP4.54□□□□□ -1.68
TDP1YBR223C YLR361C-AQ3E795 98 aa4.54□□□□□ -1.68
TDP1YBR223C YJL197C-AP0C5P0 93 aa4.52□□□□□ -1.69
TDP1YBR223C SPG1P50088 95 aa4.52□□□□□ -1.69
TDP1YBR223C LIP1Q03579 150 aa4.52□□□□□ -1.69
TDP1YBR223C YOL166W-AQ8TGJ1 51 aa4.52□□□□□ -1.69
TDP1YBR223C YAR064WP39563 99 aa4.51□□□□□ -1.69
TDP1YBR223C YBR027CP38220 110 aa4.5□□□□□ -1.69
TDP1YBR223C YJR085CP47131 105 aaKnown RBP4.49□□□□□ -1.69
TDP1YBR223C LCL2Q08045 131 aa4.49□□□□□ -1.69
TDP1YBR223C YLR157W-DP0CE99 70 aa4.48□□□□□ -1.69
TDP1YBR223C YCR043CP25361 127 aa4.48□□□□□ -1.69
TDP1YBR223C LCL1Q02786 101 aa4.48□□□□□ -1.69
TDP1YBR223C YOL013W-AP0C272 63 aaPredicted RBP4.47□□□□□ -1.69
TDP1YBR223C YHL005CP38752 130 aa4.47□□□□□ -1.69
TDP1YBR223C YOL097W-AQ3E7Y9 61 aa4.46□□□□□ -1.7
TDP1YBR223C RPS30AP0CX33 63 aaKnown RBP4.45□□□□□ -1.7
TDP1YBR223C RPS30BP0CX34 63 aaKnown RBP4.45□□□□□ -1.7
TDP1YBR223C SBH1P52870 82 aa4.45□□□□□ -1.7
TDP1YBR223C MMS2P53152 137 aa4.44□□□□□ -1.7
TDP1YBR223C YOR268CQ08734 132 aa4.43□□□□□ -1.7
TDP1YBR223C YPR153WQ06537 140 aa4.41□□□□□ -1.7
TDP1YBR223C YGL149WP53116 101 aa4.39□□□□□ -1.71
TDP1YBR223C YDL012CQ12489 107 aa4.38□□□□□ -1.71
TDP1YBR223C YHR125WP38831 101 aa4.37□□□□□ -1.71
TDP1YBR223C SDH6Q3E785 79 aa4.35□□□□□ -1.71
TDP1YBR223C KTI11Q3E840 82 aa4.35□□□□□ -1.71
TDP1YBR223C KSH1Q8TGJ3 72 aa4.35□□□□□ -1.71
TDP1YBR223C HHF1P02309 103 aaKnown RBP4.35□□□□□ -1.71
TDP1YBR223C YOR381W-AQ3E804 55 aa4.35□□□□□ -1.71
TDP1YBR223C DDR48P18899 430 aaKnown RBP4.32□□□□□ -1.72
TDP1YBR223C YKL065W-AQ2V2P2 73 aa4.31□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 36.2 ms