RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 LRRC4Q9HBW1 653 aa18.22■□□□□ 0.51
SHKBP1-212ENST00000596163 GMIPQ9P107 970 aa18.22■□□□□ 0.51
SHKBP1-212ENST00000596163 LIMA1Q9UHB6 759 aaKnown RBP18.22■□□□□ 0.51
SHKBP1-212ENST00000596163 DNAJC12Q9UKB3 198 aa18.22■□□□□ 0.51
SHKBP1-212ENST00000596163 KRBA1A5PL33 1030 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 BECN2A8MW95 431 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 MAN2B1O00754 1011 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 CAVIN2O95810 425 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 OAS1P00973 400 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 MBL2P11226 248 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 PLA2G4AP47712 749 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 ZNF165P49910 485 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 COPB1P53618 953 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 STARD6P59095 220 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 ASTLQ6HA08 431 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 GJB7Q6PEY0 223 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 C1orf228Q6PIY5 440 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 GPRIN1Q7Z2K8 1008 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 CCDC186Q7Z3E2 898 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 KIAA1958Q8N8K9 716 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 UBA3Q8TBC4 463 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 TFAP2BQ92481 460 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 SHC3Q92529 594 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 MSANTD3Q96H12 275 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 SLC22A12Q96S37 553 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 NELL2Q99435 816 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 C8orf33Q9H7E9 229 aaPredicted RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 CCL26Q9Y258 94 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 MRPS17Q9Y2R5 130 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 USP3Q9Y6I4 520 aa18.21■□□□□ 0.51
SHKBP1-212ENST00000596163 TECTAO75443 2155 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 PTPRDP23468 1912 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 SYCE3A1L190 88 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 LRRC10BA6NIK2 292 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 OLFM2O95897 454 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 PDGFBP01127 241 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 RALAP11233 206 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 BRD2P25440 801 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 NUBP1P53384 320 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 BPIFB4P59827 614 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 TPM4P67936 248 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 PTK2Q05397 1052 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 KCNMA1Q12791 1236 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 MTF1Q14872 753 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 NCAPHQ15003 741 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 PDGFRLQ15198 375 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 MEA1Q16626 185 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 RAB41Q5JT25 222 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 KLHDC7AQ5VTJ3 777 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 ZNF852Q6ZMS4 543 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 SH3RF2Q8TEC5 729 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 KCTD13Q8WZ19 329 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 LRRC3BQ96PB8 259 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 CDK5RAP1Q96SZ6 601 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 LSM14BQ9BX40 385 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 RNF38Q9H0F5 515 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 TBC1D17Q9HA65 648 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 SIX2Q9NPC8 291 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 PLCB1Q9NQ66 1216 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 HEBP1Q9NRV9 189 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 GKN1Q9NS71 199 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 DAAM1Q9Y4D1 1078 aa18.2■□□□□ 0.5
SHKBP1-212ENST00000596163 KANSL1LA0AUZ9 987 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 M0QYV0 167 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 CYP26A1O43174 497 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 TLR5O60602 858 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 ZNF18P17022 549 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 AVPR2P30518 371 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 GNA15P30679 374 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 ATP5C1P36542 298 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 TKTL1P51854 596 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 KPNA1P52294 538 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 AMPD2Q01433 879 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 ZNF77Q15935 545 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 PKDCCQ504Y2 493 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 SIX6OS1Q8N1H7 587 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 ZNF276Q8N554 614 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 TTC16Q8NEE8 873 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 HSFY1Q96LI6 401 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 PRRX2Q99811 253 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 CLIC5Q9NZA1 410 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 NAGPAQ9UK23 515 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 HCN4Q9Y3Q4 1203 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 CPQQ9Y646 472 aa18.19■□□□□ 0.5
SHKBP1-212ENST00000596163 A0A1W2PQH9 124 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 LEFTY2O00292 366 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 ARNTLO00327 626 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 SLC9A3R1O14745 358 aaPredicted RBP18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 NCAM2O15394 837 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 COCHO43405 550 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 THAP12O43422 761 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 ZBED1O96006 694 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 AOC1P19801 751 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 IFNAR2P48551 515 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 APBA1Q02410 837 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 GOLGA8FQ08AF8 430 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 GOLGA8DPQ0D2H9 430 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 USP4Q13107 963 aa18.18■□□□□ 0.5
SHKBP1-212ENST00000596163 RAPGEF1Q13905 1077 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms