RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 HFE2Q6ZVN8 426 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 CCDC186Q7Z3E2 898 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 ARHGAP18Q8N392 663 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 SCAMP5Q8TAC9 235 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 CDK5RAP1Q96SZ6 601 aaKnown RBP13.7□□□□□ -0.22
CLK3-224ENST00000568605 PLA2G2FQ9BZM2 168 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 UBXN6Q9BZV1 441 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 VPS16Q9H269 839 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 LRRC4Q9HBW1 653 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 TRPV5Q9NQA5 729 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 ARHGAP26Q9UNA1 814 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLK3-224ENST00000568605 CNTN6Q9UQ52 1028 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 SCML2Q9UQR0 700 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 HCN4Q9Y3Q4 1203 aa13.7□□□□□ -0.22
CLK3-224ENST00000568605 C2orf78A6NCI8 922 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 HHLA1C9JL84 531 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 OLFM2O95897 454 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 OAS1P00973 400 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 MBL2P11226 248 aaPredicted RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 TCF3P15923 654 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 BRD2P25440 801 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 USP8P40818 1118 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 PLA2G4AP47712 749 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 KIF11P52732 1056 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 COPB1P53618 953 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 USP4Q13107 963 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 MTF1Q14872 753 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 MEA1Q16626 185 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 SNX30Q5VWJ9 437 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 GPRIN1Q7Z2K8 1008 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 PIGZQ86VD9 579 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 TTC30AQ86WT1 665 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 SIX6OS1Q8N1H7 587 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 ARL14EPQ8N8R7 260 aaPredicted RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 SHC3Q92529 594 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 USP13Q92995 863 aaPredicted RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 LSM14BQ9BX40 385 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 SMG9Q9H0W8 520 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 GMIPQ9P107 970 aa13.69□□□□□ -0.22
CLK3-224ENST00000568605 LIMA1Q9UHB6 759 aaKnown RBP13.69□□□□□ -0.22
CLK3-224ENST00000568605 F5P12259 2224 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 LGALS16A8MUM7 142 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 STK25O00506 426 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 CYP26A1O43174 497 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 THAP12O43422 761 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 TLR5O60602 858 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 ZDHHC11BP0C7U3 371 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 RALAP11233 206 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 SLC7A9P82251 487 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 PTK2Q05397 1052 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 PDE4CQ08493 712 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 RAPGEF1Q13905 1077 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 ZNF77Q15935 545 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 CNGA2Q16280 664 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 FILIP1LQ4L180 1135 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 KIAA1958Q8N8K9 716 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 TTC16Q8NEE8 873 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 FLCNQ8NFG4 579 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 RSPRY1Q96DX4 576 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 PCMTD1Q96MG8 357 aaPredicted RBP13.68□□□□□ -0.22
CLK3-224ENST00000568605 TBC1D17Q9HA65 648 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 SIX2Q9NPC8 291 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 NAGPAQ9UK23 515 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 DNAJC12Q9UKB3 198 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 CCL26Q9Y258 94 aa13.68□□□□□ -0.22
CLK3-224ENST00000568605 MRPS17Q9Y2R5 130 aaKnown RBP13.68□□□□□ -0.22
CLK3-224ENST00000568605 MAN2B1O00754 1011 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 SLC9A3R1O14745 358 aaPredicted RBP13.67□□□□□ -0.22
CLK3-224ENST00000568605 GLULP15104 373 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 ZNF18P17022 549 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 IFNAR2P48551 515 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 CLCN5P51795 746 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 TKTL1P51854 596 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 MLLT6P55198 1093 aaPredicted RBP13.67□□□□□ -0.22
CLK3-224ENST00000568605 BPIFB4P59827 614 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 AMPD2Q01433 879 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 ADIGQ0VDE8 80 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 NCAPHQ15003 741 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 PDGFRLQ15198 375 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 ZSCAN23Q3MJ62 389 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 SLC44A4Q53GD3 710 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 RAB41Q5JT25 222 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 ASTLQ6HA08 431 aaPredicted RBP13.67□□□□□ -0.22
CLK3-224ENST00000568605 GJB7Q6PEY0 223 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 TPRG1Q6ZUI0 275 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 SH3RF2Q8TEC5 729 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 KCTD13Q8WZ19 329 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 TFAP2BQ92481 460 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 GOLGA1Q92805 767 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 EXOC4Q96A65 974 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 SLC22A12Q96S37 553 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 FUCA2Q9BTY2 467 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 C8orf33Q9H7E9 229 aaPredicted RBP13.67□□□□□ -0.22
CLK3-224ENST00000568605 PLCB1Q9NQ66 1216 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 CYLDQ9NQC7 956 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 HEBP1Q9NRV9 189 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 CLIC5Q9NZA1 410 aa13.67□□□□□ -0.22
CLK3-224ENST00000568605 CHORDC1Q9UHD1 332 aaPredicted RBP13.67□□□□□ -0.22
CLK3-224ENST00000568605 CEP83Q9Y592 693 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms