RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CASKIN2Q8WXE0 1202 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CTNNBL1Q8WYA6 563 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ERLEC1Q96DZ1 483 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 NT5C1AQ9BXI3 368 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 XYLT2Q9H1B5 865 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 TMEM161AQ9NX61 479 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CNTN3Q9P232 1028 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 MRPL42Q9Y6G3 142 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 KLHL33A6NCF5 533 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 NRP1O14786 923 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 RAD51CO43502 376 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 PALMO75781 387 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 PYGBP11216 843 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CHN1P15882 459 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 SLC8A3P57103 927 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 NKX3-2P78367 333 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 PCBP1Q15365 356 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 LRRC36Q1X8D7 754 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 FOXR2Q6PJQ5 311 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 PRSS55Q6UWB4 352 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CEP128Q6ZU80 1094 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 IRF2BP2Q7Z5L9 587 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ANKLE1Q8NAG6 615 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 TFAP2BQ92481 460 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 TMEM169Q96HH4 297 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ZNF570Q96NI8 536 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 TOX2Q96NM4 488 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 NOX5Q96PH1 765 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 GBP5Q96PP8 586 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 CYTH2Q99418 400 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ELOVL4Q9GZR5 314 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 NRDE2Q9H7Z3 1164 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 LUC7LQ9NQ29 371 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 ZFATQ9P243 1243 aa9.09□□□□□ -0.95
LIMCH1-209ENST00000509277 DDX3XO00571 662 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 RGS16O15492 202 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SOAT2O75908 522 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 H2AFZP0C0S5 128 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TKTP29401 623 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 ASPAP45381 313 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 PPP2R2AP63151 447 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 GRIK3Q13003 919 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 DSC3Q14574 896 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SOWAHAQ2M3V2 549 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 GOLGA7BQ2TAP0 167 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TMCO4Q5TGY1 634 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 DAB2IPQ5VWQ8 1189 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 OVOS1Q6IE37 1185 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CNKSR3Q6P9H4 555 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 H2AFVQ71UI9 128 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 NPAS4Q8IUM7 802 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 EPS8L1Q8TE68 723 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF606Q8WXB4 792 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SHC3Q92529 594 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 NDRG1Q92597 394 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CCDC97Q96F63 343 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 RPGRIP1Q96KN7 1286 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TMEM209Q96SK2 561 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 RMI1Q9H9A7 625 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 FGFR1OP2Q9NVK5 253 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CNOT8Q9UFF9 292 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 MAGED2Q9UNF1 606 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 ZNF711Q9Y462 761 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 KRIT1O00522 736 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC11A1P49279 550 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 YWHAEP62258 255 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 MESDQ14696 234 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CDO1Q16878 200 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SGO2Q562F6 1265 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 OR6B2Q6IFH4 312 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SPRED2Q7Z698 418 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 LNX1Q8TBB1 728 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC2A14Q8TDB8 520 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TMEM237Q96Q45 408 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 EPAS1Q99814 870 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TJP2Q9UDY2 1190 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 LNPEPQ9UIQ6 1025 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 PRUNE2Q8WUY3 3088 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 A0A1W2PQJ5 194 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TXNDC9O14530 226 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 HSD17B3P37058 310 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 NUMBP49757 651 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 GALCP54803 685 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 WDR5P61964 334 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 YWHAHQ04917 246 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 FAM26DQ5JW98 314 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 PPP1R15BQ5SWA1 713 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 DENND1BQ6P3S1 775 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 DCUN1D2Q6PH85 259 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 C15orf39Q6ZRI6 1047 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CREG2Q8IUH2 290 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CHMP6Q96FZ7 201 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 TMEM176AQ96HP8 235 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 PPP1R10Q96QC0 940 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 PCDHB18PQ96TA0 734 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 THAP2Q9H0W7 228 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 ALG13Q9NP73 1137 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 SLC27A5Q9Y2P5 690 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 COQ4Q9Y3A0 265 aa9.08□□□□□ -0.96
LIMCH1-209ENST00000509277 CCT8L1PA6NM43 557 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 328 ms