RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MTSS1LQ765P7 747 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PPIL6Q8IXY8 311 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 SSH3Q8TE77 659 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 APBB2Q92870 758 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZBTB10Q96DT7 871 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 TUBA8Q9NY65 449 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 DKK3Q9UBP4 350 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 IFRD1O00458 451 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 GLRA3O75311 464 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 HSF2Q03933 536 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 SV2CQ496J9 727 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CCNJLQ8IV13 435 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZSCAN18Q8TBC5 510 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 HLA-DQA2P01906 255 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 P4HBP07237 508 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 SWI5Q1ZZU3 235 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PACS1Q6VY07 963 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 MIER2Q8N344 545 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 B3GALNT2Q8NCR0 500 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CHL1O00533 1208 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 TGM2P21980 687 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 TARSP26639 723 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ARL3P36405 182 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PSMC5P62195 406 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PTGES3Q15185 160 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF746Q6NUN9 644 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 FAM228AQ86W67 206 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 GATAD2AQ86YP4 633 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 SCAIQ8N9R8 606 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PPP1R10Q96QC0 940 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 NOD2Q9HC29 1040 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 MAP10Q9P2G4 905 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 TPST1O60507 370 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 MYCP01106 439 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 TFE3P19532 575 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CMTM6Q9NX76 183 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 STOML2Q9UJZ1 356 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 DBR1Q9UK59 544 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 AP3M1Q9Y2T2 418 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 MYOM2P54296 1465 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 A0A1W2PP64 1363 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 FAUP35544 74 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CEBPAP49715 358 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 RAB25P57735 213 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CENPCQ03188 943 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 CDH18Q13634 790 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PFKFB3Q16875 520 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 EXOC3L1Q86VI1 746 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 PCDHB6Q9Y5E3 794 aa14.37□□□□□ -0.11
CCDC88A-201ENST00000263630 R3HDM1Q15032 1099 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF605Q86T29 641 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 NMD3Q96D46 503 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PNKPQ96T60 521 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 C8orf4Q9NR00 106 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PFDN2Q9UHV9 154 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 CHURC1-FNTBB4DL54 471 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC16A3O15427 465 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PRCPP42785 496 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 REPS1Q96D71 796 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 RIBC2Q9H4K1 309 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PCNX4Q63HM2 1172 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 LRRC74BQ6ZQY2 392 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC13A5Q86YT5 568 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 B3GALT6Q96L58 329 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 EVA1BQ9NVM1 165 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ARHGAP28Q9P2N2 729 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 RBMXL2O75526 392 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SNUPNO95149 360 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 FDX1P10109 184 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SRP54P61011 504 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 VBP1P61758 197 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 MAPK11Q15759 364 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 IQCF2Q8IXL9 164 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 C4orf33Q8N1A6 199 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ENTPD7Q9NQZ7 604 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 NCAPD2Q15021 1401 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 HPCAL1P37235 193 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PDIA6Q15084 440 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SERAC1Q96JX3 654 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 STK36Q9NRP7 1315 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 HS6ST1O60243 411 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ARHGAP22Q7Z5H3 698 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 MCEEQ96PE7 176 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 PAIP1Q9H074 479 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 USP21Q9UK80 565 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 MAPRE3Q9UPY8 281 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 MAP3K19Q56UN5 1328 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 RTN3O95197 1032 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 LDOC1O95751 146 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 NUDT14O95848 222 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 TRMT5Q32P41 509 aaKnown RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 MPP4Q96JB8 637 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 CLPBQ9H078 707 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 A0A088AWK7 358 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SLC26A4O43511 780 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF10P21506 573 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ATP13A5Q4VNC0 1218 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 CCDC80Q76M96 950 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 SMYD1Q8NB12 490 aa14.36□□□□□ -0.11
CCDC88A-201ENST00000263630 ZNF222Q9UK12 451 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms