RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	YHL005C	P38752	130 aa		4.22	□□□□□ -1.73
VPS1	YKR001C	CRC1	Q12289	327 aa		4.22	□□□□□ -1.73
VPS1	YKR001C	YHR173C	P38864	112 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	EDC2	P40023	145 aa	Predicted RBP	4.21	□□□□□ -1.74
VPS1	YKR001C	FYV12	Q08559	129 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	PPT2	Q12036	173 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	NCA3	P46955	337 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	IRC23	Q08416	157 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	YDR246W-A	Q3E763	66 aa		4.21	□□□□□ -1.74
VPS1	YKR001C	YCR025C	P25352	136 aa		4.2	□□□□□ -1.74
VPS1	YKR001C	IMP2	P46972	177 aa		4.2	□□□□□ -1.74
VPS1	YKR001C	YOR381W-A	Q3E804	55 aa		4.2	□□□□□ -1.74
VPS1	YKR001C	CCW14	O13547	238 aa		4.19	□□□□□ -1.74
VPS1	YKR001C	VTC1	P40046	129 aa	RIP-Chip data	4.19	□□□□□ -1.74	not detected
VPS1	YKR001C	MTC6	P38849	526 aa		4.19	□□□□□ -1.74
VPS1	YKR001C	YOR343C	Q12484	108 aa		4.19	□□□□□ -1.74
VPS1	YKR001C	YAL065C	O13511	128 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	RPS22A	P0C0W1	130 aa	Known RBP	4.18	□□□□□ -1.74
VPS1	YKR001C	YNL208W	P40159	199 aa	Known RBP	4.18	□□□□□ -1.74
VPS1	YKR001C	YBL008W-A	Q3E821	79 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	QCR10	P37299	77 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	YBR209W	P38311	105 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	YOL118C	Q08259	102 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	YOR314W	Q12506	109 aa		4.18	□□□□□ -1.74
VPS1	YKR001C	COX9	P07255	59 aa		4.17	□□□□□ -1.74
VPS1	YKR001C	ERI1	P62651	68 aa	Known RBP	4.17	□□□□□ -1.74
VPS1	YKR001C	AIM4	P38305	123 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS1	YKR001C	SPI1	P40092	148 aa		4.16	□□□□□ -1.74
VPS1	YKR001C	CRH1	P53301	507 aa		4.16	□□□□□ -1.74
VPS1	YKR001C	COA2	Q3E823	68 aa		4.16	□□□□□ -1.74
VPS1	YKR001C	YGR121W-A	Q3E816	71 aa		4.16	□□□□□ -1.74
VPS1	YKR001C	AGA1	P32323	725 aa		4.15	□□□□□ -1.74
VPS1	YKR001C	CTR2	P38865	189 aa		4.15	□□□□□ -1.74
VPS1	YKR001C	ATP15	P21306	62 aa		4.15	□□□□□ -1.75
VPS1	YKR001C	YML122C	Q03207	126 aa		4.15	□□□□□ -1.75
VPS1	YKR001C	YLR162W	Q06235	118 aa		4.15	□□□□□ -1.75
VPS1	YKR001C	YER145C-A	A0A023PYF4	145 aa		4.14	□□□□□ -1.75
VPS1	YKR001C	YCR041W	P37265	110 aa		4.14	□□□□□ -1.75
VPS1	YKR001C	YCR043C	P25361	127 aa		4.13	□□□□□ -1.75
VPS1	YKR001C	YAR023C	D6VPM8	179 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	RPL23A	P0CX41	137 aa	Known RBP	4.12	□□□□□ -1.75
VPS1	YKR001C	RPL23B	P0CX42	137 aa	Known RBP	4.12	□□□□□ -1.75
VPS1	YKR001C	YIL163C	P40448	117 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	AIM19	P40502	157 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YIR020C	P40575	100 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	RGM1	Q00453	211 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	LIP1	Q03579	150 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	SOM1	Q05676	74 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	IRC19	Q07843	230 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	ATP20	Q12233	115 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	TIM22	Q12328	207 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YER188C-A	P0C0V2	99 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YLR156W	P0CE96	114 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YLR159W	P0CE97	114 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YLR161W	P0CE98	114 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	QCR9	P22289	66 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YEL067C	P39978	195 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	SIP18	P50263	79 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	SED1	Q01589	338 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	YOR192C-C	Q3E736	78 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	OST5	Q92316	86 aa		4.12	□□□□□ -1.75
VPS1	YKR001C	MIG3	P39943	394 aa		4.11	□□□□□ -1.75
VPS1	YKR001C	YNR077C	P53758	84 aa		4.11	□□□□□ -1.75
VPS1	YKR001C	MRP10	O75012	95 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	MPC3	P53311	146 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	YKL065W-A	Q2V2P2	73 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	YOR020W-A	Q3E824	90 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	YER084W	P40057	128 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	YPI1	P43587	155 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	YMR122C	Q03879	124 aa		4.1	□□□□□ -1.75
VPS1	YKR001C	SRL1	Q08673	210 aa		4.09	□□□□□ -1.75
VPS1	YKR001C	MSA2	P36157	363 aa		4.09	□□□□□ -1.76
VPS1	YKR001C	RPR2	P40571	144 aa		4.09	□□□□□ -1.76
VPS1	YKR001C	RPL26B	P53221	127 aa	Known RBP	4.09	□□□□□ -1.76
VPS1	YKR001C	YGR035W-A	Q45U48	73 aa		4.09	□□□□□ -1.76
VPS1	YKR001C	RRT1	P38192	103 aa		4.08	□□□□□ -1.76
VPS1	YKR001C	YHR022C	P38763	256 aa		4.08	□□□□□ -1.76
VPS1	YKR001C	YFL015C	P43578	164 aa		4.08	□□□□□ -1.76
VPS1	YKR001C	RPS23A	P0CX29	145 aa	Known RBP	4.07	□□□□□ -1.76
VPS1	YKR001C	RPS23B	P0CX30	145 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	ATP19	P81451	68 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	MRPS8	Q03799	155 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	YLR285C-A	Q3E771	56 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	MPC2	P38857	129 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	DCV1	P43595	202 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	YPR053C	Q6Q5F3	151 aa		4.07	□□□□□ -1.76
VPS1	YKR001C	MDN1	Q12019	4910 aa	Known RBP	4.07	□□□□□ -1.76
VPS1	YKR001C	YBL071C	P38185	102 aa		4.06	□□□□□ -1.76
VPS1	YKR001C	YPR153W	Q06537	140 aa		4.06	□□□□□ -1.76
VPS1	YKR001C	EDC1	P53080	175 aa	Predicted RBP	4.06	□□□□□ -1.76
VPS1	YKR001C	YMR007W	Q03675	126 aa		4.06	□□□□□ -1.76
VPS1	YKR001C	YGR269W	P40326	108 aa		4.05	□□□□□ -1.76
VPS1	YKR001C	YDL022C-A	P0C5L6	82 aa		4.04	□□□□□ -1.76
VPS1	YKR001C	ERG2	P32352	222 aa		4.03	□□□□□ -1.76
VPS1	YKR001C	RPL36B	O14455	100 aa	Known RBP	4.02	□□□□□ -1.77
VPS1	YKR001C	RPL36A	P05745	100 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS1	YKR001C	YCL048W-A	Q2V2Q2	79 aa		4.01	□□□□□ -1.77
VPS1	YKR001C	SPC1	P46965	94 aa		4.01	□□□□□ -1.77
VPS1	YKR001C	YDL241W	Q07738	123 aa		4.01	□□□□□ -1.77
VPS1	YKR001C	MRPL38	P35996	138 aa	Predicted RBP	4	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 34.3 ms