RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C ARC15P40518 154 aaRIP-Chip data2.32□□□□□ -2.04not detected
CDC40YDR364C MSL1P40567 111 aaPredicted RBP2.32□□□□□ -2.04
CDC40YDR364C TOS6P48560 102 aa2.32□□□□□ -2.04
CDC40YDR364C YGL230CP53074 147 aa2.32□□□□□ -2.04
CDC40YDR364C YDR042CQ03205 200 aa2.32□□□□□ -2.04
CDC40YDR364C YMR103CQ04436 120 aa2.32□□□□□ -2.04
CDC40YDR364C FCF1Q05498 189 aaPredicted RBP2.32□□□□□ -2.04
CDC40YDR364C NAT5Q08689 176 aa2.32□□□□□ -2.04
CDC40YDR364C SCS22Q6Q595 175 aa2.32□□□□□ -2.04
CDC40YDR364C ATP5P09457 212 aa2.31□□□□□ -2.04
CDC40YDR364C SEC11P15367 167 aa2.31□□□□□ -2.04
CDC40YDR364C YKR070WP36151 352 aaKnown RBP2.31□□□□□ -2.04
CDC40YDR364C YDL157CQ12082 118 aa2.31□□□□□ -2.04
CDC40YDR364C COA3Q3E7B2 85 aa2.31□□□□□ -2.04
CDC40YDR364C YOR008C-AQ3E7B9 74 aa2.31□□□□□ -2.04
CDC40YDR364C YHR032W-AP0C5N6 59 aa2.3□□□□□ -2.04
CDC40YDR364C YJR146WP47174 117 aa2.3□□□□□ -2.04
CDC40YDR364C PMP3P87284 55 aa2.3□□□□□ -2.04
CDC40YDR364C SAE3P89114 91 aa2.3□□□□□ -2.04
CDC40YDR364C SGF11Q03067 99 aa2.3□□□□□ -2.04
CDC40YDR364C YKL044WP36092 106 aa2.29□□□□□ -2.04
CDC40YDR364C NRG2P38082 220 aa2.29□□□□□ -2.04
CDC40YDR364C YBR209WP38311 105 aa2.29□□□□□ -2.04
CDC40YDR364C YIL059CP40520 121 aa2.29□□□□□ -2.04
CDC40YDR364C YGL088WP53151 121 aa2.29□□□□□ -2.04
CDC40YDR364C YGR240C-AQ3E786 66 aa2.29□□□□□ -2.04
CDC40YDR364C TSC3Q3E790 80 aa2.29□□□□□ -2.04
CDC40YDR364C UBC5P15732 148 aa2.28□□□□□ -2.04
CDC40YDR364C ATP15P21306 62 aa2.28□□□□□ -2.04
CDC40YDR364C YPL073CP40323 161 aa2.28□□□□□ -2.04
CDC40YDR364C GLC8P41818 229 aa2.28□□□□□ -2.04
CDC40YDR364C ERI1P62651 68 aaKnown RBP2.28□□□□□ -2.04
CDC40YDR364C AIM11P87275 137 aa2.28□□□□□ -2.04
CDC40YDR364C PAU23Q07987 124 aa2.28□□□□□ -2.04
CDC40YDR364C YOL014WQ08110 124 aa2.28□□□□□ -2.04
CDC40YDR364C VAM10Q08474 114 aa2.28□□□□□ -2.04
CDC40YDR364C PAU17Q12370 124 aa2.28□□□□□ -2.04
CDC40YDR364C YML100W-AQ8TGT0 57 aa2.28□□□□□ -2.04
CDC40YDR364C PBI2P0CT04 75 aaKnown RBP2.27□□□□□ -2.05
CDC40YDR364C MRP49P32388 137 aa2.27□□□□□ -2.05
CDC40YDR364C YRA2P36036 203 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
CDC40YDR364C YAR029WP39549 74 aa2.27□□□□□ -2.05
CDC40YDR364C YPL261CQ08976 102 aa2.27□□□□□ -2.05
CDC40YDR364C AUA1P32450 94 aa2.26□□□□□ -2.05
CDC40YDR364C YEL008WP40001 126 aa2.26□□□□□ -2.05
CDC40YDR364C SKI6P46948 246 aaPredicted RBP2.26□□□□□ -2.05
CDC40YDR364C CWC27Q02770 301 aa2.26□□□□□ -2.05
CDC40YDR364C YML079WQ03629 201 aa2.26□□□□□ -2.05
CDC40YDR364C RDS3Q06835 107 aaPredicted RBP2.26□□□□□ -2.05
CDC40YDR364C YMR122W-AQ3E842 84 aa2.26□□□□□ -2.05
CDC40YDR364C HAP3P13434 144 aa2.25□□□□□ -2.05
CDC40YDR364C YOR268CQ08734 132 aa2.25□□□□□ -2.05
CDC40YDR364C YLR363W-AQ3E747 85 aa2.25□□□□□ -2.05
CDC40YDR364C YPR010C-AA5Z2X5 72 aa2.24□□□□□ -2.05
CDC40YDR364C YDL022C-AP0C5L6 82 aa2.24□□□□□ -2.05
CDC40YDR364C MID2P36027 376 aa2.24□□□□□ -2.05
CDC40YDR364C SHU1P38751 150 aa2.24□□□□□ -2.05
CDC40YDR364C YEL067CP39978 195 aa2.24□□□□□ -2.05
CDC40YDR364C YLR194CQ05777 254 aa2.24□□□□□ -2.05
CDC40YDR364C CIN5P40917 295 aa2.23□□□□□ -2.05
CDC40YDR364C SPC1P46965 94 aa2.23□□□□□ -2.05
CDC40YDR364C ELC1Q03071 99 aa2.23□□□□□ -2.05
CDC40YDR364C YMR295CQ03559 197 aa2.23□□□□□ -2.05
CDC40YDR364C ENV10Q99382 181 aa2.23□□□□□ -2.05
CDC40YDR364C MDN1Q12019 4910 aaKnown RBP2.23□□□□□ -2.05
CDC40YDR364C PAI3P01094 68 aa2.23□□□□□ -2.05
CDC40YDR364C RPL33AP05744 107 aaKnown RBP2.23□□□□□ -2.05
CDC40YDR364C YBR219CP38317 127 aa2.23□□□□□ -2.05
CDC40YDR364C SVP26P38869 228 aa2.23□□□□□ -2.05
CDC40YDR364C VTC1P40046 129 aaRIP-Chip data2.23□□□□□ -2.05not detected
CDC40YDR364C RPL33BP41056 107 aaKnown RBP2.23□□□□□ -2.05
CDC40YDR364C YNR077CP53758 84 aa2.23□□□□□ -2.05
CDC40YDR364C YNL190WP53872 204 aa2.23□□□□□ -2.05
CDC40YDR364C QCR8P08525 94 aa2.22□□□□□ -2.05
CDC40YDR364C YFL019CP43576 117 aa2.22□□□□□ -2.05
CDC40YDR364C SBH1P52870 82 aa2.22□□□□□ -2.05
CDC40YDR364C MRPS12P53732 153 aa2.22□□□□□ -2.05
CDC40YDR364C YMR320WQ04897 101 aa2.22□□□□□ -2.05
CDC40YDR364C YKL023C-AQ2V2P3 75 aa2.22□□□□□ -2.05
CDC40YDR364C YAR023CD6VPM8 179 aa2.21□□□□□ -2.06
CDC40YDR364C RTC6O14464 93 aa2.21□□□□□ -2.06
CDC40YDR364C UGX2P32772 223 aa2.21□□□□□ -2.06
CDC40YDR364C YAL064WP39711 94 aa2.21□□□□□ -2.06
CDC40YDR364C YER181CP40097 107 aa2.21□□□□□ -2.06
CDC40YDR364C YIL102C-AQ2V2P5 75 aa2.21□□□□□ -2.06
CDC40YDR364C YMR175W-AQ3E766 64 aa2.21□□□□□ -2.06
CDC40YDR364C RPC10P40422 70 aa2.2□□□□□ -2.06
CDC40YDR364C YLR296WQ05898 108 aa2.2□□□□□ -2.06
CDC40YDR364C YLR412C-AQ3E742 68 aa2.2□□□□□ -2.06
CDC40YDR364C YLL066W-BQ8TGJ7 56 aa2.2□□□□□ -2.06
CDC40YDR364C YAL065CO13511 128 aa2.19□□□□□ -2.06
CDC40YDR364C YNL198CP40166 100 aa2.19□□□□□ -2.06
CDC40YDR364C CWP2P43497 92 aa2.19□□□□□ -2.06
CDC40YDR364C LSM6Q06406 86 aaKnown RBP2.19□□□□□ -2.06
CDC40YDR364C FYV12Q08559 129 aa2.19□□□□□ -2.06
CDC40YDR364C YLR361C-AQ3E795 98 aa2.19□□□□□ -2.06
CDC40YDR364C KRE1P17260 313 aa2.18□□□□□ -2.06
CDC40YDR364C NHP2P32495 156 aaPredicted RBP2.18□□□□□ -2.06
CDC40YDR364C YGL193CP53097 103 aa2.18□□□□□ -2.06
CDC40YDR364C YPR195CQ06594 109 aa2.18□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms