RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ZDHHC17Q8IUH5 632 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 ZMIZ2Q8NF64 920 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 SCLYQ96I15 445 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 RBM41Q96IZ5 413 aaKnown RBP14.47□□□□□ -0.09
PTPRF-202ENST00000372405 SUSD3Q96L08 255 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 PKMYT1Q99640 499 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 DCLK3Q9C098 648 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 DNAI2Q9GZS0 605 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 CRISPLD2Q9H0B8 497 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 KRT82Q9NSB4 513 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 TMEM161AQ9NX61 479 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 DDX56Q9NY93 547 aaKnown RBP14.47□□□□□ -0.09
PTPRF-202ENST00000372405 DNAJB4Q9UDY4 337 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 CDH9Q9ULB4 789 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 USP18Q9UMW8 372 aa14.47□□□□□ -0.09
PTPRF-202ENST00000372405 VWA8A3KMH1 1905 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 LRRD1A4D1F6 860 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 DAPK3O43293 454 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 TRUB2O95900 331 aaKnown RBP14.46□□□□□ -0.09
PTPRF-202ENST00000372405 PTPN7P35236 360 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 PCK1P35558 622 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 FNTAP49354 379 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 ADCY1Q08828 1119 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 FAAP100Q0VG06 881 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 SMC1AQ14683 1233 aaKnown RBP14.46□□□□□ -0.09
PTPRF-202ENST00000372405 DUPD1Q68J44 220 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 FAM35AQ86V20 835 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 CRIPAKQ8N1N5 446 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 OR10T2Q8NGX3 314 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 MYCBPAPQ8TBZ2 947 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 NDRG1Q92597 394 aaKnown RBP14.46□□□□□ -0.09
PTPRF-202ENST00000372405 TMEM209Q96SK2 561 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 SMOQ99835 787 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 FAM118BQ9BPY3 351 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 C11orf84Q9BUA3 381 aaPredicted RBP14.46□□□□□ -0.09
PTPRF-202ENST00000372405 ASNSD1Q9NWL6 643 aa14.46□□□□□ -0.09
PTPRF-202ENST00000372405 hCG_1818297A0A087WSY0 165 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 FAM187AA6NFU0 413 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 KRT7P08729 469 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CD48P09326 243 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 TNNT3P45378 269 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ACADSBP45954 432 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 GATMP50440 423 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ATP11AP98196 1134 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ADIGQ0VDE8 80 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SNX1Q13596 522 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 TAZQ16635 292 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CDO1Q16878 200 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ZFYVE27Q5T4F4 411 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 KAZNQ674X7 775 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 EMBQ6PCB8 327 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SND1Q7KZF4 910 aaKnown RBP eCLIP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 DIS3LQ8TF46 1054 aaKnown RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 KCTD13Q8WZ19 329 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CAVIN3Q969G5 261 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ZBTB9Q96C00 473 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 KCNK16Q96T55 309 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ERP44Q9BS26 406 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 MED10Q9BTT4 135 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 RHOBTB2Q9BYZ6 727 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 TRIM31Q9BZY9 425 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 DPH5Q9H2P9 285 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 TMLHEQ9NVH6 421 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 MICAL3Q7RTP6 2002 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 RNF8O76064 485 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 FAM200BP0CF97 657 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 PCSK1P29120 753 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SCNN1AP37088 669 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 NDUFV1P49821 464 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CCL23P55773 120 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 MAP3K7CLP57077 242 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SNX16P57768 344 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 COPS2P61201 443 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CUL1Q13616 776 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 HADHQ16836 314 aaKnown RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 TRIM60Q495X7 471 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 FAM171BQ6P995 826 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 GPRIN1Q7Z2K8 1008 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 LRRTM3Q86VH5 581 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CCDC105Q8IYK2 499 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 EIF1ADQ8N9N8 165 aaKnown RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 CMASQ8NFW8 434 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SPATA18Q8TC71 538 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 MAIP1Q8WWC4 291 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 SLCO2A1Q92959 643 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ZNF333Q96JL9 665 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ACBD6Q9BR61 282 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 UBXN6Q9BZV1 441 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 HIPK3Q9H422 1215 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 ELAC1Q9H777 363 aaKnown RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 OGFRQ9NZT2 677 aa14.45□□□□□ -0.1
PTPRF-202ENST00000372405 UTP11Q9Y3A2 253 aaKnown RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 FNDC1Q4ZHG4 1894 aaPredicted RBP14.45□□□□□ -0.1
PTPRF-202ENST00000372405 AP1G2O75843 785 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 COL6A1P12109 1028 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 KDELR1P24390 212 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 HDAC4P56524 1084 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 TLE2Q04725 743 aa14.44□□□□□ -0.1
PTPRF-202ENST00000372405 TFDP3Q5H9I0 405 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 341.4 ms