RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 OSBPL8Q9BZF1 889 aa19.04■□□□□ 0.64
VIM-201ENST00000224237 EPB41L5Q9HCM4 733 aa19.04■□□□□ 0.64
VIM-201ENST00000224237 TBX21Q9UL17 535 aa19.04■□□□□ 0.64
VIM-201ENST00000224237 ATP8B1O43520 1251 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 RARAP10276 462 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 RALAP11233 206 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 SDC4P31431 198 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 CTCFP49711 727 aaPredicted RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 ATP13A4Q4VNC1 1196 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 TRNP1Q6NT89 227 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 SMARCD1Q96GM5 515 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 SLITRK1Q96PX8 696 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 HINFPQ9BQA5 517 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 PCYOX1Q9UHG3 505 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 USP18Q9UMW8 372 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 TTC3P53804 2025 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 TRAPPC3O43617 180 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 AP1G2O75843 785 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 PTPN7P35236 360 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 FNTAP49354 379 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 DR1Q01658 176 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 YWHAHQ04917 246 aaPredicted RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 ADIGQ0VDE8 80 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 KLF1Q13351 362 aaPredicted RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 MAPRE1Q15691 268 aaKnown RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 TXNRD3NBQ6F5E7 133 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 FAM171BQ6P995 826 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 KHSRPQ92945 711 aaKnown RBP eCLIP19.03■□□□□ 0.64
VIM-201ENST00000224237 RNF25Q96BH1 459 aaPredicted RBP19.03■□□□□ 0.64
VIM-201ENST00000224237 CASD1Q96PB1 797 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 NCAPGQ9BPX3 1015 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 C11orf49Q9H6J7 331 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 LRRC19Q9H756 370 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 LRRC4Q9HBW1 653 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 KLHL11Q9NVR0 708 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 HCSTQ9UBK5 93 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 DNAJB4Q9UDY4 337 aa19.03■□□□□ 0.64
VIM-201ENST00000224237 TTI1O43156 1089 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 BEST1O76090 585 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 MYBL2P10244 700 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 IL1R2P27930 398 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 MIPP30301 263 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 MAP3K7CLP57077 242 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 TSPY1Q01534 308 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 LLGL1Q15334 1064 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 TAF5Q15542 800 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 EFHC1Q5JVL4 640 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 CCDC137Q6PK04 289 aaKnown RBP19.02■□□□□ 0.64
VIM-201ENST00000224237 NPAS4Q8IUM7 802 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 CRIPAKQ8N1N5 446 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 CLEC4CQ8WTT0 213 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 MYLPFQ96A32 169 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 MRPL9Q9BYD2 267 aaKnown RBP19.02■□□□□ 0.64
VIM-201ENST00000224237 PLEKHA4Q9H4M7 779 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 ZWILCHQ9H900 591 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 HOMER3Q9NSC5 361 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 TMEM39AQ9NV64 488 aa19.02■□□□□ 0.64
VIM-201ENST00000224237 UTP11Q9Y3A2 253 aaKnown RBP19.02■□□□□ 0.64
VIM-201ENST00000224237 FAM187AA6NFU0 413 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 ZSCAN5CA6NGD5 496 aaPredicted RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 C15orf59Q2T9L4 293 aaPredicted RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 CCDC14Q49A88 953 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 TFDP3Q5H9I0 405 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 VWCEQ96DN2 955 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 CFAP57Q96MR6 1250 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 HERPUD2Q9BSE4 406 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 RAB17Q9H0T7 212 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 RASAL2Q9UJF2 1139 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 PRG3Q9Y2Y8 225 aaPredicted RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 ESYT3A0FGR9 886 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 LRRD1A4D1F6 860 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 BHMG1C9JSJ3 638 aaPredicted RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 PI4K2BG5E9Z4 385 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 HSF2BPO75031 334 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 CLTBP09497 229 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 COILP38432 576 aaPredicted RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 PTPN9P43378 593 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 EPHB4P54760 987 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 CUL1Q13616 776 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 CDO1Q16878 200 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 SMTNL2Q2TAL5 461 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 MFSD7Q6UXD7 560 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 SPOCD1Q6ZMY3 1216 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 GSPT2Q8IYD1 628 aaKnown RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 SIX6OS1Q8N1H7 587 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 EIF1ADQ8N9N8 165 aaKnown RBP19.01■□□□□ 0.63
VIM-201ENST00000224237 OR10T2Q8NGX3 314 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 RAPGEF5Q92565 580 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 PKMYT1Q99640 499 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 SMOQ99835 787 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 HEMGNQ9BXL5 484 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 UBXN6Q9BZV1 441 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 NRDE2Q9H7Z3 1164 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 FAM53CQ9NYF3 392 aa19.01■□□□□ 0.63
VIM-201ENST00000224237 MICAL3Q7RTP6 2002 aa19■□□□□ 0.63
VIM-201ENST00000224237 TADA2AO75478 443 aa19■□□□□ 0.63
VIM-201ENST00000224237 TJP3O95049 919 aa19■□□□□ 0.63
VIM-201ENST00000224237 TRUB2O95900 331 aaKnown RBP19■□□□□ 0.63
VIM-201ENST00000224237 MRPS5P82675 430 aaKnown RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms