RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	RPS25B	P0C0T4	108 aa	Known RBP	2.76	□□□□□ -1.97
SOF1	YLL011W	PAM16	P42949	149 aa		2.76	□□□□□ -1.97
SOF1	YLL011W	RPS25A	Q3E792	108 aa	Predicted RBP	2.76	□□□□□ -1.97
SOF1	YLL011W	YCR099C	P25657	155 aa		2.75	□□□□□ -1.97
SOF1	YLL011W	HPA3	P39979	161 aa		2.75	□□□□□ -1.97
SOF1	YLL011W	YFR035C	P43608	114 aa		2.75	□□□□□ -1.97
SOF1	YLL011W	ZEO1	Q08245	113 aa		2.75	□□□□□ -1.97
SOF1	YLL011W	YHR007C-A	Q07074	71 aa		2.74	□□□□□ -1.97
SOF1	YLL011W	HRT1	Q08273	121 aa		2.74	□□□□□ -1.97
SOF1	YLL011W	CMC4	Q3E7A9	73 aa		2.74	□□□□□ -1.97
SOF1	YLL011W	MRPL44	P19956	98 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	YKL044W	P36092	106 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	YBR090C	P38253	122 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	GNA1	P43577	159 aa	Predicted RBP	2.73	□□□□□ -1.97
SOF1	YLL011W	DAN1	P47178	298 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	AVO2	Q04749	426 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	FLO9	P39712	1322 aa		2.73	□□□□□ -1.97
SOF1	YLL011W	UBC5	P15732	148 aa		2.72	□□□□□ -1.97
SOF1	YLL011W	HSP150	P32478	413 aa		2.72	□□□□□ -1.97
SOF1	YLL011W	YEL014C	P39999	101 aa		2.72	□□□□□ -1.97
SOF1	YLL011W	YGR164W	P53291	111 aa		2.72	□□□□□ -1.97
SOF1	YLL011W	STT4	P37297	1900 aa		2.72	□□□□□ -1.97
SOF1	YLL011W	HAP3	P13434	144 aa		2.71	□□□□□ -1.97
SOF1	YLL011W	RPB7	P34087	171 aa		2.71	□□□□□ -1.97
SOF1	YLL011W	IPT1	P38954	527 aa		2.71	□□□□□ -1.97
SOF1	YLL011W	SNF11	P38956	169 aa		2.71	□□□□□ -1.97
SOF1	YLL011W	MET31	Q03081	177 aa		2.71	□□□□□ -1.97
SOF1	YLL011W	SEC59	P20048	519 aa		2.71	□□□□□ -1.98
SOF1	YLL011W	RPS27A	P35997	82 aa	Known RBP	2.71	□□□□□ -1.98
SOF1	YLL011W	RPS27B	P38711	82 aa		2.71	□□□□□ -1.98
SOF1	YLL011W	ERV14	P53173	138 aa		2.71	□□□□□ -1.98
SOF1	YLL011W	BRP1	P53194	125 aa		2.71	□□□□□ -1.98
SOF1	YLL011W	PAU21	P0CE86	164 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	PAU22	P0CE87	164 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	ECM31	P38122	312 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	YEA6	P39953	335 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	DCV1	P43595	202 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	NAT5	Q08689	176 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	YCL001W-B	Q96VH2	84 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	MED11	Q99278	115 aa		2.7	□□□□□ -1.98
SOF1	YLL011W	FAS1	P07149	2051 aa	Known RBP	2.69	□□□□□ -1.98
SOF1	YLL011W	EMP24	P32803	203 aa	Known RBP	2.69	□□□□□ -1.98
SOF1	YLL011W	YMR103C	Q04436	120 aa		2.69	□□□□□ -1.98
SOF1	YLL011W	RPL13A	Q12690	199 aa	Predicted RBP	2.69	□□□□□ -1.98
SOF1	YLL011W	FUN14	P18411	198 aa		2.68	□□□□□ -1.98
SOF1	YLL011W	GPI19	Q04082	140 aa		2.68	□□□□□ -1.98
SOF1	YLL011W	GPI11	Q06636	219 aa		2.68	□□□□□ -1.98
SOF1	YLL011W	YOR032W-A	Q8TGS1	66 aa		2.68	□□□□□ -1.98
SOF1	YLL011W	SEC16	P48415	2195 aa	Known RBP	2.68	□□□□□ -1.98
SOF1	YLL011W	TDA2	P40045	126 aa		2.67	□□□□□ -1.98
SOF1	YLL011W	YAE1	P47118	141 aa	Predicted RBP	2.67	□□□□□ -1.98
SOF1	YLL011W	YHR086W-A	Q3E746	53 aa		2.67	□□□□□ -1.98
SOF1	YLL011W	HSP10	P38910	106 aa		2.66	□□□□□ -1.98
SOF1	YLL011W	YGL149W	P53116	101 aa		2.66	□□□□□ -1.98
SOF1	YLL011W	RGM1	Q00453	211 aa		2.66	□□□□□ -1.98
SOF1	YLL011W	NHP10	Q03435	203 aa		2.66	□□□□□ -1.98
SOF1	YLL011W	CYR1	P08678	2026 aa	Known RBP	2.66	□□□□□ -1.98
SOF1	YLL011W	HYP2	P23301	157 aa	Known RBP	2.65	□□□□□ -1.98
SOF1	YLL011W	PEP8	P40335	379 aa		2.65	□□□□□ -1.98
SOF1	YLL011W	YFL051C	P43552	160 aa		2.65	□□□□□ -1.98
SOF1	YLL011W	YPL067C	Q02754	198 aa		2.65	□□□□□ -1.98
SOF1	YLL011W	YLR365W	Q7LIF2	110 aa		2.65	□□□□□ -1.98
SOF1	YLL011W	RPL22B	P56628	122 aa	Known RBP	2.65	□□□□□ -1.99
SOF1	YLL011W	RTC6	O14464	93 aa		2.64	□□□□□ -1.99
SOF1	YLL011W	YBR219C	P38317	127 aa		2.64	□□□□□ -1.99
SOF1	YLL011W	TAR1	Q8TGM6	124 aa		2.64	□□□□□ -1.99
SOF1	YLL011W	YSF3	P0C074	85 aa	Predicted RBP	2.63	□□□□□ -1.99
SOF1	YLL011W	NRG2	P38082	220 aa		2.63	□□□□□ -1.99
SOF1	YLL011W	YEL008W	P40001	126 aa		2.63	□□□□□ -1.99
SOF1	YLL011W	YFR010W-A	P0C5N0	62 aa		2.62	□□□□□ -1.99
SOF1	YLL011W	YHR130C	P38834	111 aa		2.62	□□□□□ -1.99
SOF1	YLL011W	YER187W	P40102	141 aa		2.62	□□□□□ -1.99
SOF1	YLL011W	IGO1	P53897	168 aa		2.62	□□□□□ -1.99
SOF1	YLL011W	YLR162W	Q06235	118 aa		2.62	□□□□□ -1.99
SOF1	YLL011W	YMR090W	Q04304	227 aa	Known RBP	2.61	□□□□□ -1.99
SOF1	YLL011W	MIX14	Q04341	121 aa		2.61	□□□□□ -1.99
SOF1	YLL011W	YPL261C	Q08976	102 aa		2.6	□□□□□ -1.99
SOF1	YLL011W	Q0297	Q9ZZV8	51 aa		2.6	□□□□□ -1.99
SOF1	YLL011W	PAU12	P53343	120 aa		2.59	□□□□□ -1.99
SOF1	YLL011W	QCR8	P08525	94 aa		2.58	□□□□□ -2
SOF1	YLL011W	YJL197C-A	P0C5P0	93 aa		2.58	□□□□□ -2
SOF1	YLL011W	YHR214C-D	P0CX93	97 aa		2.58	□□□□□ -2
SOF1	YLL011W	UBC4	P15731	148 aa		2.58	□□□□□ -2
SOF1	YLL011W	MRPL11	P36521	249 aa	Predicted RBP	2.58	□□□□□ -2
SOF1	YLL011W	YLR296W	Q05898	108 aa		2.58	□□□□□ -2
SOF1	YLL011W	OST5	Q92316	86 aa		2.58	□□□□□ -2
SOF1	YLL011W	MIC10	Q96VH5	97 aa		2.58	□□□□□ -2
SOF1	YLL011W	YHL037C	P38733	133 aa		2.58	□□□□□ -2
SOF1	YLL011W	FIT1	Q04433	528 aa		2.58	□□□□□ -2
SOF1	YLL011W	YOS1	Q3E834	85 aa		2.58	□□□□□ -2
SOF1	YLL011W	MHF1	Q3E835	90 aa		2.58	□□□□□ -2
SOF1	YLL011W	HUR1	P45820	110 aa		2.57	□□□□□ -2
SOF1	YLL011W	YNL146C-A	Q3E7Z1	64 aa		2.57	□□□□□ -2
SOF1	YLL011W	GTT1	P40582	234 aa		2.56	□□□□□ -2
SOF1	YLL011W	DAD1	Q12248	94 aa		2.56	□□□□□ -2
SOF1	YLL011W	KSH1	Q8TGJ3	72 aa		2.56	□□□□□ -2
SOF1	YLL011W	RPL36B	O14455	100 aa	Known RBP	2.55	□□□□□ -2
SOF1	YLL011W	RPL36A	P05745	100 aa	Predicted RBP	2.55	□□□□□ -2
SOF1	YLL011W	YGL014C-A	P0C5N1	53 aa		2.55	□□□□□ -2
SOF1	YLL011W	YHR213W	P0CI67	198 aa		2.55	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 30.7 ms