RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W YCR022CP25620 114 aa6.37□□□□□ -1.39
UFD1YGR048W SPI1P40092 148 aa6.37□□□□□ -1.39
UFD1YGR048W ECO1P43605 281 aa6.37□□□□□ -1.39
UFD1YGR048W YGR018CP53211 109 aa6.37□□□□□ -1.39
UFD1YGR048W PCP1P53259 346 aa6.37□□□□□ -1.39
UFD1YGR048W YGR219WP53307 113 aa6.37□□□□□ -1.39
UFD1YGR048W RPL15BP54780 204 aaPredicted RBP6.37□□□□□ -1.39
UFD1YGR048W HAL1Q01766 294 aa6.37□□□□□ -1.39
UFD1YGR048W YDR209CQ03480 137 aa6.37□□□□□ -1.39
UFD1YGR048W PBA1Q05778 276 aa6.37□□□□□ -1.39
UFD1YGR048W NCE102Q12207 173 aaRIP-Chip data6.36□□□□□ -1.39not detected
UFD1YGR048W UBC4P15731 148 aa6.35□□□□□ -1.39
UFD1YGR048W RPL16BP26785 198 aaKnown RBP6.35□□□□□ -1.39
UFD1YGR048W YRA2P36036 203 aaKnown RBP RIP-Chip data6.35□□□□□ -1.39not detected
UFD1YGR048W RRS1Q08746 203 aaKnown RBP6.35□□□□□ -1.39
UFD1YGR048W YLR342W-AQ3E810 57 aa6.35□□□□□ -1.39
UFD1YGR048W YBL071CP38185 102 aa6.34□□□□□ -1.39
UFD1YGR048W MPC2P38857 129 aa6.34□□□□□ -1.39
UFD1YGR048W YMR181CQ03231 154 aa6.34□□□□□ -1.39
UFD1YGR048W YLR281CQ05863 155 aa6.34□□□□□ -1.39
UFD1YGR048W CCW14O13547 238 aa6.33□□□□□ -1.4
UFD1YGR048W RPS16AP0CX51 143 aaKnown RBP6.33□□□□□ -1.4
UFD1YGR048W RPS16BP0CX52 143 aaKnown RBP6.33□□□□□ -1.4
UFD1YGR048W DCV1P43595 202 aa6.33□□□□□ -1.4
UFD1YGR048W RSM19P53733 91 aaPredicted RBP6.33□□□□□ -1.4
UFD1YGR048W CTR2P38865 189 aa6.32□□□□□ -1.4
UFD1YGR048W MXR2P25566 168 aa6.31□□□□□ -1.4
UFD1YGR048W RPS27AP35997 82 aaKnown RBP6.31□□□□□ -1.4
UFD1YGR048W MSA2P36157 363 aa6.31□□□□□ -1.4
UFD1YGR048W RPS27BP38711 82 aa6.31□□□□□ -1.4
UFD1YGR048W MMS2P53152 137 aa6.31□□□□□ -1.4
UFD1YGR048W YNL046WP53956 172 aa6.31□□□□□ -1.4
UFD1YGR048W GAT3Q07928 141 aa6.31□□□□□ -1.4
UFD1YGR048W MTC6P38849 526 aa6.3□□□□□ -1.4
UFD1YGR048W YAR029WP39549 74 aa6.3□□□□□ -1.4
UFD1YGR048W NRM1P53718 249 aa6.3□□□□□ -1.4
UFD1YGR048W MRPS12P53732 153 aa6.29□□□□□ -1.4
UFD1YGR048W TDA7P53882 636 aaPredicted RBP6.29□□□□□ -1.4
UFD1YGR048W PRM7Q12459 698 aa6.29□□□□□ -1.4
UFD1YGR048W YOR008C-AQ3E7B9 74 aa6.29□□□□□ -1.4
UFD1YGR048W BLM10P43583 2143 aa6.28□□□□□ -1.4
UFD1YGR048W RPL28P02406 149 aaKnown RBP6.28□□□□□ -1.4
UFD1YGR048W YHR213WP0CI67 198 aa6.28□□□□□ -1.4
UFD1YGR048W URM1P40554 99 aaPredicted RBP6.28□□□□□ -1.4
UFD1YGR048W GLO1P50107 326 aa6.28□□□□□ -1.4
UFD1YGR048W RPL11BQ3E757 174 aaPredicted RBP6.28□□□□□ -1.4
UFD1YGR048W YDR246W-AQ3E763 66 aa6.28□□□□□ -1.4
UFD1YGR048W SNP1Q00916 300 aaPredicted RBP6.27□□□□□ -1.41
UFD1YGR048W PPT2Q12036 173 aa6.27□□□□□ -1.41
UFD1YGR048W RPL11AP0C0W9 174 aaKnown RBP6.26□□□□□ -1.41
UFD1YGR048W YBR209WP38311 105 aa6.26□□□□□ -1.41
UFD1YGR048W YHR022CP38763 256 aa6.26□□□□□ -1.41
UFD1YGR048W HUR1P45820 110 aa6.26□□□□□ -1.41
UFD1YGR048W YNL190WP53872 204 aa6.26□□□□□ -1.41
UFD1YGR048W YML122CQ03207 126 aa6.26□□□□□ -1.41
UFD1YGR048W YDL009CQ12210 107 aa6.26□□□□□ -1.41
UFD1YGR048W NAG1Q8TGN9 163 aa6.26□□□□□ -1.41
UFD1YGR048W FPR1P20081 114 aaKnown RBP6.25□□□□□ -1.41
UFD1YGR048W ATP15P21306 62 aa6.25□□□□□ -1.41
UFD1YGR048W MED6P38782 295 aa6.25□□□□□ -1.41
UFD1YGR048W PEX17P40155 199 aa6.25□□□□□ -1.41
UFD1YGR048W YDR524C-BQ3E6R4 66 aa6.25□□□□□ -1.41
UFD1YGR048W TDA8Q6B2U8 126 aa6.25□□□□□ -1.41
UFD1YGR048W RPS14AP06367 137 aaKnown RBP6.24□□□□□ -1.41
UFD1YGR048W AIM4P38305 123 aaPredicted RBP6.24□□□□□ -1.41
UFD1YGR048W RPS14BP39516 138 aaKnown RBP6.24□□□□□ -1.41
UFD1YGR048W PEX22P39718 180 aa6.24□□□□□ -1.41
UFD1YGR048W YFL019CP43576 117 aa6.24□□□□□ -1.41
UFD1YGR048W IMP2P46972 177 aa6.23□□□□□ -1.41
UFD1YGR048W PBP4Q07362 185 aaKnown RBP6.23□□□□□ -1.41
UFD1YGR048W YLR285C-AQ3E771 56 aa6.23□□□□□ -1.41
UFD1YGR048W SPS100P13130 326 aa6.22□□□□□ -1.41
UFD1YGR048W SEC16P48415 2195 aaKnown RBP6.22□□□□□ -1.41
UFD1YGR048W YHR214C-DP0CX93 97 aa6.21□□□□□ -1.42
UFD1YGR048W ACC1Q00955 2233 aaKnown RBP6.21□□□□□ -1.42
UFD1YGR048W MIG3P39943 394 aa6.2□□□□□ -1.42
UFD1YGR048W REE1P40893 198 aa6.2□□□□□ -1.42
UFD1YGR048W PIR5P46999 287 aa6.2□□□□□ -1.42
UFD1YGR048W SHU1P38751 150 aa6.19□□□□□ -1.42
UFD1YGR048W PGU1P47180 361 aa6.19□□□□□ -1.42
UFD1YGR048W RRT15Q3E811 62 aa6.19□□□□□ -1.42
UFD1YGR048W MIC10Q96VH5 97 aa6.19□□□□□ -1.42
UFD1YGR048W YLR156WP0CE96 114 aa6.18□□□□□ -1.42
UFD1YGR048W YLR159WP0CE97 114 aa6.18□□□□□ -1.42
UFD1YGR048W YLR161WP0CE98 114 aa6.18□□□□□ -1.42
UFD1YGR048W SPT4P32914 102 aaPredicted RBP6.18□□□□□ -1.42
UFD1YGR048W RRT1P38192 103 aa6.18□□□□□ -1.42
UFD1YGR048W ICY1Q04329 127 aa6.18□□□□□ -1.42
UFD1YGR048W ATP20Q12233 115 aa6.18□□□□□ -1.42
UFD1YGR048W GAT4P40569 121 aa6.17□□□□□ -1.42
UFD1YGR048W ERI1P62651 68 aaKnown RBP6.17□□□□□ -1.42
UFD1YGR048W LEE1Q02799 301 aaKnown RBP6.17□□□□□ -1.42
UFD1YGR048W IRC21Q04772 201 aa6.17□□□□□ -1.42
UFD1YGR048W YJR146WP47174 117 aa6.16□□□□□ -1.42
UFD1YGR048W BRR2P32639 2163 aaKnown RBP6.16□□□□□ -1.42
UFD1YGR048W BEM2P39960 2167 aaKnown RBP6.16□□□□□ -1.42
UFD1YGR048W YAL065CO13511 128 aa6.15□□□□□ -1.42
UFD1YGR048W QCR8P08525 94 aa6.15□□□□□ -1.42
UFD1YGR048W POL2P21951 2222 aaKnown RBP6.15□□□□□ -1.43
UFD1YGR048W KRE9P39005 276 aa6.14□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms