RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W SPG4Q04438 115 aa4.57□□□□□ -1.68
RPN11YFR004W FCF1Q05498 189 aaPredicted RBP4.57□□□□□ -1.68
RPN11YFR004W HOR7Q05827 59 aa4.57□□□□□ -1.68
RPN11YFR004W ADH2P00331 348 aaKnown RBP4.56□□□□□ -1.68
RPN11YFR004W YER135CP40082 130 aa4.56□□□□□ -1.68
RPN11YFR004W YNL198CP40166 100 aa4.56□□□□□ -1.68
RPN11YFR004W YNL194CP40169 301 aa4.56□□□□□ -1.68
RPN11YFR004W YPL261CQ08976 102 aa4.56□□□□□ -1.68
RPN11YFR004W COA3Q3E7B2 85 aa4.56□□□□□ -1.68
RPN11YFR004W YKL070WP36087 169 aa4.55□□□□□ -1.68
RPN11YFR004W KEG1P43614 200 aa4.55□□□□□ -1.68
RPN11YFR004W YBR200W-AQ3E755 54 aa4.55□□□□□ -1.68
RPN11YFR004W RPL42AP0CX27 106 aaKnown RBP4.54□□□□□ -1.68
RPN11YFR004W RPL42BP0CX28 106 aaKnown RBP4.54□□□□□ -1.68
RPN11YFR004W YEL067CP39978 195 aa4.54□□□□□ -1.68
RPN11YFR004W SIM1P40472 476 aa4.54□□□□□ -1.68
RPN11YFR004W TOS6P48560 102 aa4.54□□□□□ -1.68
RPN11YFR004W ELC1Q03071 99 aa4.54□□□□□ -1.68
RPN11YFR004W RRG8Q06109 277 aa4.54□□□□□ -1.68
RPN11YFR004W CCW12Q12127 133 aa4.54□□□□□ -1.68
RPN11YFR004W MRPL23Q12487 163 aaPredicted RBP4.54□□□□□ -1.68
RPN11YFR004W YNL146C-AQ3E7Z1 64 aa4.54□□□□□ -1.68
RPN11YFR004W PAI3P01094 68 aa4.53□□□□□ -1.68
RPN11YFR004W Q0255P03881 472 aa4.53□□□□□ -1.68
RPN11YFR004W YDL022C-AP0C5L6 82 aa4.53□□□□□ -1.68
RPN11YFR004W AIM34Q03673 198 aa4.53□□□□□ -1.68
RPN11YFR004W VAR1P02381 398 aa4.52□□□□□ -1.69
RPN11YFR004W CDC43P18898 376 aa4.52□□□□□ -1.69
RPN11YFR004W RPL16BP26785 198 aaKnown RBP4.52□□□□□ -1.69
RPN11YFR004W MIG3P39943 394 aa4.52□□□□□ -1.69
RPN11YFR004W DCV1P43595 202 aa4.52□□□□□ -1.69
RPN11YFR004W YFR057WP43625 151 aa4.52□□□□□ -1.69
RPN11YFR004W RUB1Q03919 77 aa4.52□□□□□ -1.69
RPN11YFR004W YMR244WQ04018 355 aa4.52□□□□□ -1.69
RPN11YFR004W YIL102C-AQ2V2P5 75 aa4.52□□□□□ -1.69
RPN11YFR004W YOR008C-AQ3E7B9 74 aa4.52□□□□□ -1.69
RPN11YFR004W YHR212W-AP0CX91 67 aa4.51□□□□□ -1.69
RPN11YFR004W AUA1P32450 94 aa4.51□□□□□ -1.69
RPN11YFR004W OXA1P39952 402 aa4.51□□□□□ -1.69
RPN11YFR004W VTC1P40046 129 aaRIP-Chip data4.51□□□□□ -1.69not detected
RPN11YFR004W YFR035CP43608 114 aa4.51□□□□□ -1.69
RPN11YFR004W YLR042CQ07990 161 aa4.51□□□□□ -1.69
RPN11YFR004W TAR1Q8TGM6 124 aa4.51□□□□□ -1.69
RPN11YFR004W ADH1P00330 348 aaKnown RBP4.5□□□□□ -1.69
RPN11YFR004W ANB1P19211 157 aa4.5□□□□□ -1.69
RPN11YFR004W ATP15P21306 62 aa4.5□□□□□ -1.69
RPN11YFR004W YKR041WP36134 250 aa4.5□□□□□ -1.69
RPN11YFR004W ECM33P38248 429 aaKnown RBP4.5□□□□□ -1.69
RPN11YFR004W CIN5P40917 295 aa4.5□□□□□ -1.69
RPN11YFR004W YNR077CP53758 84 aa4.5□□□□□ -1.69
RPN11YFR004W AIM11P87275 137 aa4.5□□□□□ -1.69
RPN11YFR004W YRA2P36036 203 aaKnown RBP RIP-Chip data4.49□□□□□ -1.69not detected
RPN11YFR004W YGL088WP53151 121 aa4.49□□□□□ -1.69
RPN11YFR004W MRPS8Q03799 155 aa4.49□□□□□ -1.69
RPN11YFR004W YLR296WQ05898 108 aa4.49□□□□□ -1.69
RPN11YFR004W HYP2P23301 157 aaKnown RBP4.48□□□□□ -1.69
RPN11YFR004W RPL16AP26784 199 aaKnown RBP4.48□□□□□ -1.69
RPN11YFR004W AIM29P36154 155 aa4.48□□□□□ -1.69
RPN11YFR004W YBR209WP38311 105 aa4.48□□□□□ -1.69
RPN11YFR004W YER181CP40097 107 aa4.48□□□□□ -1.69
RPN11YFR004W YJR146WP47174 117 aa4.48□□□□□ -1.69
RPN11YFR004W YLR281CQ05863 155 aa4.48□□□□□ -1.69
RPN11YFR004W PRM3Q08931 133 aa4.48□□□□□ -1.69
RPN11YFR004W RPL28P02406 149 aaKnown RBP4.47□□□□□ -1.69
RPN11YFR004W RRT13P40042 185 aa4.47□□□□□ -1.69
RPN11YFR004W YER085CP40058 173 aa4.47□□□□□ -1.69
RPN11YFR004W IGO2Q9P305 131 aa4.47□□□□□ -1.69
RPN11YFR004W MID2P36027 376 aa4.46□□□□□ -1.7
RPN11YFR004W HOT13P36078 116 aa4.46□□□□□ -1.7
RPN11YFR004W SCW10Q04951 389 aa4.46□□□□□ -1.7
RPN11YFR004W YLR194CQ05777 254 aa4.46□□□□□ -1.7
RPN11YFR004W YKL023C-AQ2V2P3 75 aa4.46□□□□□ -1.7
RPN11YFR004W RPL18AP0CX49 186 aaKnown RBP4.45□□□□□ -1.7
RPN11YFR004W RPL18BP0CX50 186 aaKnown RBP4.45□□□□□ -1.7
RPN11YFR004W ALG13P53178 202 aa4.45□□□□□ -1.7
RPN11YFR004W CPR1P14832 162 aaKnown RBP4.44□□□□□ -1.7
RPN11YFR004W ARO2P28777 376 aaKnown RBP4.44□□□□□ -1.7
RPN11YFR004W YPT53P36019 220 aa4.44□□□□□ -1.7
RPN11YFR004W YIL059CP40520 121 aa4.44□□□□□ -1.7
RPN11YFR004W YNL190WP53872 204 aa4.44□□□□□ -1.7
RPN11YFR004W YPL257WQ08974 193 aa4.44□□□□□ -1.7
RPN11YFR004W SLO1Q3E784 85 aa4.44□□□□□ -1.7
RPN11YFR004W YNL217WP40152 326 aa4.43□□□□□ -1.7
RPN11YFR004W TRP1P00912 224 aa4.42□□□□□ -1.7
RPN11YFR004W RPS11AP0CX47 156 aaKnown RBP4.42□□□□□ -1.7
RPN11YFR004W RPS11BP0CX48 156 aaKnown RBP4.42□□□□□ -1.7
RPN11YFR004W TOA2P32774 122 aa4.42□□□□□ -1.7
RPN11YFR004W YEL008WP40001 126 aa4.42□□□□□ -1.7
RPN11YFR004W MRPS12P53732 153 aa4.42□□□□□ -1.7
RPN11YFR004W LSM6Q06406 86 aaKnown RBP4.42□□□□□ -1.7
RPN11YFR004W YCL021W-AQ96VH3 125 aa4.42□□□□□ -1.7
RPN11YFR004W RPL2AP0CX45 254 aaKnown RBP4.41□□□□□ -1.7
RPN11YFR004W RPL2BP0CX46 254 aaKnown RBP4.41□□□□□ -1.7
RPN11YFR004W UGX2P32772 223 aa4.41□□□□□ -1.7
RPN11YFR004W SHU1P38751 150 aa4.41□□□□□ -1.7
RPN11YFR004W PEX17P40155 199 aa4.41□□□□□ -1.7
RPN11YFR004W PMP3P87284 55 aa4.41□□□□□ -1.7
RPN11YFR004W NHP2P32495 156 aaPredicted RBP4.4□□□□□ -1.71
RPN11YFR004W YCH1P42937 148 aa4.4□□□□□ -1.71
RPN11YFR004W YPS5P53057 165 aa4.4□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 59.6 ms