RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RIBC1Q8N443 379 aaPredicted RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 PSPC1Q8WXF1 523 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 PAWRQ96IZ0 340 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 NLRP4Q96MN2 994 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PDCD2LQ9BRP1 358 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MRPL4Q9BYD3 311 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 TRIM55Q9BYV6 548 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 NEUROG2Q9H2A3 272 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 LRRC4CQ9HCJ2 640 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PALMDQ9NP74 551 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 SIX2Q9NPC8 291 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 ACP6Q9NPH0 428 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 ARHGEF38Q9NXL2 777 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 ZFATQ9P243 1243 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 TMEM150BA6NC51 233 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PSTPIP1O43586 416 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PRPSAP2O60256 369 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 GSTA1P08263 222 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PDGFRBP09619 1106 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 GHRP10912 638 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PRKACAP17612 351 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MARK3P27448 753 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MARCKSL1P49006 195 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 GTF2BQ00403 316 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PPIDQ08752 370 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 SPIRE1Q08AE8 756 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 EMC2Q15006 297 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 CCNG2Q16589 344 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 OR6B2Q6IFH4 312 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MAB21L3Q8N8X9 362 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 HSPH1Q92598 858 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PRCCQ92733 491 aaPredicted RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 VCXQ9H320 206 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PARVBQ9HBI1 364 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 DDX3YO15523 660 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 GMNNO75496 209 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PROSCO94903 275 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 ITGB5P18084 799 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 GCNT1Q02742 428 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MLLT1Q03111 559 aaPredicted RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 CUL2Q13617 745 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 TFDP2Q14188 446 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 PIGHQ14442 188 aaPredicted RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 BSPRYQ5W0U4 402 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 MCOLN2Q8IZK6 566 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 ESX1Q8N693 406 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 FAM167AQ96KS9 214 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 FGD4Q96M96 766 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 HEXIM2Q96MH2 286 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 TARS2Q9BW92 718 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 TEX13BQ9BXU2 312 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 QPCTLQ9NXS2 382 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 EURLQ9NYK6 297 aa10.87□□□□□ -0.67
LIG1-220ENST00000601091 SCAF8Q9UPN6 1271 aaKnown RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 CICQ96RK0 1608 aaPredicted RBP10.87□□□□□ -0.67
LIG1-220ENST00000601091 A0A0G2JND7 137 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 KRT3P12035 628 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 S100A1P23297 94 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 GPC3P51654 580 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 EFNA5P52803 228 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 HMGCS2P54868 508 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 USP46P62068 366 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 SUPT20HL1Q3ZLR7 823 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 FBXO41Q8TF61 875 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 LENG9Q96B70 501 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 SKA1Q96BD8 255 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ATG4CQ96DT6 458 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 C12orf4Q9NQ89 552 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 CYP26B1Q9NR63 512 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 EDARQ9UNE0 448 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 SLIT2O94813 1529 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 IGLV3-22A0A075B6J6 115 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 KRT20P35900 424 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ATP6V1E1P36543 226 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 NOVP48745 357 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 MRPS35P82673 323 aaKnown RBP10.86□□□□□ -0.67
LIG1-220ENST00000601091 GADL1Q6ZQY3 521 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 APPL2Q8NEU8 664 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 SHC3Q92529 594 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 MCEEQ96PE7 176 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 PRM3Q9NNZ6 103 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 TMEM59LQ9UK28 342 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 HNRNPRO43390 633 aaKnown RBP10.86□□□□□ -0.67
LIG1-220ENST00000601091 KCNJ13O60928 360 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 KRT37O76014 449 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 INHBCP55103 352 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 PPATQ06203 517 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ANKMY2Q8IV38 441 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 FAM20CQ8IXL6 584 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 RAVER1Q8IY67 606 aaKnown RBP10.86□□□□□ -0.67
LIG1-220ENST00000601091 CHPFQ8IZ52 775 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 C4orf33Q8N1A6 199 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 AGBL3Q8NEM8 1001 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 TTC17Q96AE7 1141 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 C1orf74Q96LT6 269 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ATP13A3Q9H7F0 1226 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 NOD2Q9HC29 1040 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 ERVK-5Q9HDB9 667 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 DMAC2Q9NW81 257 aa10.86□□□□□ -0.67
LIG1-220ENST00000601091 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms