RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TRAIPQ9BWF2 469 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 DCLK3Q9C098 648 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 CYLDQ9NQC7 956 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 SQORQ9Y6N5 450 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 TRIP11Q15643 1979 aa17.7■□□□□ 0.42
LDLR-206ENST00000557958 E5RJQ4 531 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 WARSP23381 471 aaKnown RBP17.69■□□□□ 0.42
LDLR-206ENST00000557958 ZNF143P52747 638 aaPredicted RBP17.69■□□□□ 0.42
LDLR-206ENST00000557958 CALCOCO2Q13137 446 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 PKDCCQ504Y2 493 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 TFDP3Q5H9I0 405 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 SPDYCQ5MJ68 293 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 ANKRD33Q7Z3H0 272 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 ATL2Q8NHH9 583 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 JOSD2Q8TAC2 188 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 KBTBD7Q8WVZ9 684 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 C1orf54Q8WWF1 131 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 RNF25Q96BH1 459 aaPredicted RBP17.69■□□□□ 0.42
LDLR-206ENST00000557958 HEMGNQ9BXL5 484 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 GOLGA2P5Q9HBQ8 144 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 TMEM39AQ9NV64 488 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 TJP2Q9UDY2 1190 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 EFR3BQ9Y2G0 817 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 LRRD1A4D1F6 860 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 NBNO60934 754 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 LRCH4O75427 683 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 COL6A1P12109 1028 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 GPD1P21695 349 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 CYP2C18P33260 490 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 SCN1AP35498 2009 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 PCK1P35558 622 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 MLH1P40692 756 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 ACADSBP45954 432 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 SPOCD1Q6ZMY3 1216 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 DEFB128Q7Z7B8 93 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 ANKRD52Q8NB46 1076 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 TSEN2Q8NCE0 465 aaKnown RBP17.69■□□□□ 0.42
LDLR-206ENST00000557958 PGBD4Q96DM1 585 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 GAD1Q99259 594 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 CNPY3Q9BT09 278 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 SLC4A5Q9BY07 1137 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 TSPYL2Q9H2G4 693 aaPredicted RBP17.69■□□□□ 0.42
LDLR-206ENST00000557958 UBN1Q9NPG3 1134 aa17.69■□□□□ 0.42
LDLR-206ENST00000557958 GOLGA8KD6RF30 607 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 SPTLC1O15269 473 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 ZNF623O75123 536 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 RNF40O75150 1001 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 PFKMP08237 780 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 RPL9P32969 192 aaKnown RBP17.68■□□□□ 0.42
LDLR-206ENST00000557958 DSC3Q14574 896 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 LRRC26Q2I0M4 334 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 FAM183BPQ6ZVS7 135 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 NECAB2Q7Z6G3 386 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 MRPL10Q7Z7H8 261 aaKnown RBP17.68■□□□□ 0.42
LDLR-206ENST00000557958 TMEM110Q86TL2 294 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 TTC30AQ86WT1 665 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 TMEM86AQ8N2M4 240 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 ANKLE1Q8NAG6 615 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 DBF4BQ8NFT6 615 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 CCHCR1Q8TD31 782 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 SLC35F5Q8WV83 523 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 CCDC114Q96M63 670 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 PRDM5Q9NQX1 630 aaPredicted RBP17.68■□□□□ 0.42
LDLR-206ENST00000557958 VPS18Q9P253 973 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 SNX24Q9Y343 169 aa17.68■□□□□ 0.42
LDLR-206ENST00000557958 CYB561D2O14569 222 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PDGFRBP09619 1106 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PAX3P23760 479 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 SCNN1AP37088 669 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 SLC25A11Q02978 314 aaKnown RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 KRT17Q04695 432 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 SNX1Q13596 522 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 LLGL1Q15334 1064 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 LRIG3Q6UXM1 1119 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 RTN4RL1Q86UN2 441 aaPredicted RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 EMC1Q8N766 993 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 FRMD8P1Q9BZ68 369 aaPredicted RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 CHST7Q9NS84 486 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 INPP5FQ9Y2H2 1132 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 A0A0U1RQF3 1178 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 ARL5CA6NH57 179 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 GOLGA6L10A6NI86 522 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PI4K2BG5E9Z4 385 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PITPNM1O00562 1244 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 SYF2O95926 243 aaKnown RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 PDGFRAP16234 1089 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 KCNJ1P48048 391 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 AFF1P51825 1210 aaKnown RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 PLTPP55058 493 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 SLC6A3Q01959 620 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PTK6Q13882 451 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 PMF1Q6P1K2 205 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 DRICH1Q6PGQ1 229 aaPredicted RBP17.67■□□□□ 0.42
LDLR-206ENST00000557958 MFSD7Q6UXD7 560 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 AGMOQ6ZNB7 445 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 ZNF365Q70YC5 407 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 TMC3Q7Z5M5 1100 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 IQCKQ8N0W5 287 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 B3GALNT2Q8NCR0 500 aa17.67■□□□□ 0.42
LDLR-206ENST00000557958 TOX2Q96NM4 488 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms