RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TMEM30AQ9NV96 361 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 CLEC1BQ9P126 229 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 C2orf16Q68DN1 1984 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 FAM170AA1A519 330 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 SLC38A8A6NNN8 435 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 GOLGA6L6A8MZA4 724 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 AKR1B15C9JRZ8 316 aaPredicted RBP15.82■□□□□ 0.12
NUP54-213ENST00000513352 BEST1O76090 585 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 MMEP08473 750 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 SETSIPP0DME0 302 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 CDC25BP30305 580 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 MRE11P49959 708 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 ADKP55263 362 aaKnown RBP15.82■□□□□ 0.12
NUP54-213ENST00000513352 PDE4CQ08493 712 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 KLHL30Q0D2K2 578 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 CES5AQ6NT32 575 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 SYCE2Q6PIF2 218 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 ANP32BQ92688 251 aaKnown RBP15.82■□□□□ 0.12
NUP54-213ENST00000513352 SECISBP2LQ93073 1101 aaKnown RBP15.82■□□□□ 0.12
NUP54-213ENST00000513352 C8orf48Q96LL4 319 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 CORO1BQ9BR76 489 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 ZNHIT6Q9NWK9 470 aaKnown RBP15.82■□□□□ 0.12
NUP54-213ENST00000513352 CD207Q9UJ71 328 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 PATJQ8NI35 1801 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 MYO16Q9Y6X6 1858 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 DOCK6Q96HP0 2047 aa15.82■□□□□ 0.12
NUP54-213ENST00000513352 REV3LO60673 3130 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 XPO1O14980 1071 aaKnown RBP15.81■□□□□ 0.12
NUP54-213ENST00000513352 MFAP3LO75121 409 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 CFHP08603 1231 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 CSH1P0DML2 217 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 CSH2P0DML3 217 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 SKILP12757 684 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 LTBRP36941 435 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 RGS7P49802 495 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 SLC5A3P53794 718 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 MTMR3Q13615 1198 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 COL19A1Q14993 1142 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 E4F1Q66K89 784 aaPredicted RBP15.81■□□□□ 0.12
NUP54-213ENST00000513352 GRASPQ7Z6J2 395 aaPredicted RBP15.81■□□□□ 0.12
NUP54-213ENST00000513352 CNGA4Q8IV77 575 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 ZMIZ2Q8NF64 920 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 CMASQ8NFW8 434 aaPredicted RBP15.81■□□□□ 0.12
NUP54-213ENST00000513352 SPATA17Q96L03 361 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 CSNK1G1Q9HCP0 422 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 ST7Q9NRC1 585 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 HCFC1R1Q9NWW0 138 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 AIPL1Q9NZN9 384 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 NOCTQ9UK39 431 aaKnown RBP15.81■□□□□ 0.12
NUP54-213ENST00000513352 ASB3Q9Y575 518 aa15.81■□□□□ 0.12
NUP54-213ENST00000513352 GREB1Q4ZG55 1949 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 TULP2O00295 520 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 MYL4P12829 197 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 CDR2Q01850 454 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ITIH3Q06033 890 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 TBX2Q13207 712 aaPredicted RBP15.8■□□□□ 0.12
NUP54-213ENST00000513352 DENND5BQ6ZUT9 1274 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 IRF2BP2Q7Z5L9 587 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.8■□□□□ 0.12
NUP54-213ENST00000513352 PIGZQ86VD9 579 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ZNF677Q86XU0 584 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 HS6ST3Q8IZP7 471 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 C1orf131Q8NDD1 294 aaKnown RBP15.8■□□□□ 0.12
NUP54-213ENST00000513352 OR8K1Q8NGG5 319 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 FEZF2Q8TBJ5 459 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 PSMG2Q969U7 264 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ZNF707Q96C28 371 aaPredicted RBP15.8■□□□□ 0.12
NUP54-213ENST00000513352 MSLNLQ96KJ4 702 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 AGPAT1Q99943 283 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 LRRC4Q9HBW1 653 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ASAH2Q9NR71 780 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 CDH22Q9UJ99 828 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 PCDHGC3Q9UN70 934 aa15.8■□□□□ 0.12
NUP54-213ENST00000513352 ZNF638Q14966 1978 aaKnown RBP15.8■□□□□ 0.12
NUP54-213ENST00000513352 PIK3R2O00459 728 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 RTN3O95197 1032 aaPredicted RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 SERPING1P05155 500 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 RHOP08100 348 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PTPN2P17706 415 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 TNFAIP3P21580 790 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 NTHL1P78549 312 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 FMO1Q01740 532 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PABPC1LQ4VXU2 614 aaKnown RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 PKDCCQ504Y2 493 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 CYP4A22Q5TCH4 519 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 NAA35Q5VZE5 725 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 PDZD4Q76G19 769 aaPredicted RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 GPRIN1Q7Z2K8 1008 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 DNAJB7Q7Z6W7 309 aaPredicted RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 GPR149Q86SP6 731 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 NUP93Q8N1F7 819 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 TMEM35BQ8NCS4 154 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 SCAMP5Q8TAC9 235 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 DDX1Q92499 740 aaKnown RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 SYN2Q92777 582 aaPredicted RBP15.79■□□□□ 0.12
NUP54-213ENST00000513352 RIPOR3Q96MK2 946 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 NOX5Q96PH1 765 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 GCNAQ96QF7 691 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 ADAM7Q9H2U9 754 aa15.79■□□□□ 0.12
NUP54-213ENST00000513352 HAUS4Q9H6D7 363 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms