RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TUBB8Q3ZCM7 444 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 GJC2Q5T442 439 aaPredicted RBP4.9□□□□□ -1.63
VPS29-202ENST00000447578 TICAM2Q86XR7 235 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 CCDC33Q8N5R6 958 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 IL31RAQ8NI17 732 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 SCARB1Q8WTV0 552 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 NUP133Q8WUM0 1156 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 DDB2Q92466 427 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 FAM167AQ96KS9 214 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 ZNF778Q96MU6 729 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 DMRTA2Q96SC8 542 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 HEPHQ9BQS7 1158 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 MANSC1Q9H8J5 431 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 CPNE5Q9HCH3 593 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 VSX1Q9NZR4 365 aaPredicted RBP4.9□□□□□ -1.63
VPS29-202ENST00000447578 CPA4Q9UI42 421 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 LZTS1Q9Y250 596 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 DGKBQ9Y6T7 804 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 KIAA0556O60303 1618 aa4.9□□□□□ -1.63
VPS29-202ENST00000447578 DISP1Q96F81 1524 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 ISM1B1AKI9 464 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 ELFN1P0C7U0 828 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 ALAS1P13196 640 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 TYRP14679 529 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 BRAFP15056 766 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 SLC7A1P30825 629 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 TECP42680 631 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 FMO1Q01740 532 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 LMOD3Q0VAK6 560 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 CNGA2Q16280 664 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 WDR78Q5VTH9 848 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 KAZNQ674X7 775 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 KIAA0895LQ68EN5 471 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 HIBCHQ6NVY1 386 aaPredicted RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 PGBD2Q6P3X8 592 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 GADL1Q6ZQY3 521 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 LIX1LQ8IVB5 337 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 SYTL1Q8IYJ3 562 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 MYCT1Q8N699 235 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 BRI3BPQ8WY22 251 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 TFAP2BQ92481 460 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 SMG7Q92540 1137 aaKnown RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 RAB24Q969Q5 203 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 UROC1Q96N76 676 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 UNKQ9C0B0 810 aaKnown RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 PNPLA8Q9NP80 782 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 SARS2Q9NP81 518 aaKnown RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 CNNM1Q9NRU3 951 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 C9orf78Q9NZ63 289 aaPredicted RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 ABCF2Q9UG63 623 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 MAGED2Q9UNF1 606 aaPredicted RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 CEP83Q9Y592 693 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 PCDHGB3Q9Y5G1 929 aa4.89□□□□□ -1.63
VPS29-202ENST00000447578 EIF4G3O43432 1585 aaKnown RBP4.89□□□□□ -1.63
VPS29-202ENST00000447578 WIPF3A6NGB9 483 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 TEX33O43247 280 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 FGF18O76093 207 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 IL18RAPO95256 599 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 DDCP20711 480 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 GATA3P23771 443 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 SLC6A4P31645 630 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 GRK6P43250 576 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 ZNF81P51508 661 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 SUMO3P55854 103 aaPredicted RBP4.88□□□□□ -1.63
VPS29-202ENST00000447578 ATP8B2P98198 1209 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 CCDC38Q502W7 563 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 GGT6Q6P531 493 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 VWA1Q6PCB0 445 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 LDHAL6AQ6ZMR3 332 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 PEG10Q86TG7 708 aaKnown RBP4.88□□□□□ -1.63
VPS29-202ENST00000447578 TEX19Q8NA77 164 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 SLC30A5Q8TAD4 765 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 TMEM125Q96AQ2 219 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 CYFIP2Q96F07 1278 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 TMX3Q96JJ7 454 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 MED15Q96RN5 788 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 BRIP1Q9BX63 1249 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 TLR10Q9BXR5 811 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 MYLK2Q9H1R3 596 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 CALCOCO1Q9P1Z2 691 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 CPNE7Q9UBL6 633 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS29-202ENST00000447578 PCDHGB2Q9Y5G2 931 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 PCDHA1Q9Y5I3 950 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 MYBBP1AQ9BQG0 1328 aaKnown RBP4.88□□□□□ -1.63
VPS29-202ENST00000447578 AKNAQ7Z591 1439 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 SYNJ2O15056 1496 aa4.88□□□□□ -1.63
VPS29-202ENST00000447578 NUP153P49790 1475 aaKnown RBP4.88□□□□□ -1.63
VPS29-202ENST00000447578 MAGI1Q96QZ7 1491 aaPredicted RBP4.88□□□□□ -1.63
VPS29-202ENST00000447578 A0A087WV62 115 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 MANSC4A6NHS7 340 aaPredicted RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 MYO1FO00160 1098 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 APOL1O14791 398 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ADAMTS3O15072 1205 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ANP32CO43423 234 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TLR5O60602 858 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 PARP1P09874 1014 aaKnown RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 MALP21145 153 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ICA1Q05084 483 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TARDBPQ13148 414 aaKnown RBP eCLIP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms