RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 B3GALNT2Q8NCR0 500 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 TTC8Q8TAM2 541 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 CYP2S1Q96SQ9 504 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 ARHGAP26Q9UNA1 814 aa18.91■□□□□ 0.62
HDDC3-201ENST00000330334 F8VP50 259 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 ZNF202O95125 648 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 VNN1O95497 513 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 CKMP06732 381 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 P4HA1P13674 534 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 HDCP19113 662 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 HOXA6P31267 233 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 MCCD1P59942 119 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-201ENST00000330334 MTF1Q14872 753 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 PON2Q15165 354 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 ZNF77Q15935 545 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 ZNF699Q32M78 642 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 TMEM196Q5HYL7 178 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 GUF1Q8N442 669 aaKnown RBP18.9■□□□□ 0.62
HDDC3-201ENST00000330334 RIN3Q8TB24 985 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 OSCP1Q8WVF1 389 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 EXOC4Q96A65 974 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 CCDC34Q96HJ3 373 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 TNIP3Q96KP6 325 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 SLC22A12Q96S37 553 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 B3GNT5Q9BYG0 378 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 EBF3Q9H4W6 596 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 TRPC7Q9HCX4 862 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 TRPM5Q9NZQ8 1165 aa18.9■□□□□ 0.62
HDDC3-201ENST00000330334 C2orf78A6NCI8 922 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 ZNF840PA6NDX5 716 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 OTOL1A6NHN0 477 aaPredicted RBP18.89■□□□□ 0.61
HDDC3-201ENST00000330334 USP46P62068 366 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 DLG4P78352 724 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 SATB1Q01826 763 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 GRSF1Q12849 480 aaKnown RBP eCLIP18.89■□□□□ 0.61
HDDC3-201ENST00000330334 SV2AQ7L0J3 742 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 ARL14EPQ8N8R7 260 aaPredicted RBP18.89■□□□□ 0.61
HDDC3-201ENST00000330334 DPEP3Q9H4B8 488 aa18.89■□□□□ 0.61
HDDC3-201ENST00000330334 RBM12Q9NTZ6 932 aaKnown RBP18.89■□□□□ 0.61
HDDC3-201ENST00000330334 KIF26AQ9ULI4 1882 aaPredicted RBP18.88■□□□□ 0.61
HDDC3-201ENST00000330334 ASS1P00966 412 aaKnown RBP18.88■□□□□ 0.61
HDDC3-201ENST00000330334 PRR29P0C7W0 189 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 RPL13P26373 211 aaKnown RBP18.88■□□□□ 0.61
HDDC3-201ENST00000330334 CDH8P55286 799 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 USP4Q13107 963 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 C1orf220Q5T0J3 134 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 CEP135Q66GS9 1140 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 TRIM68Q6AZZ1 485 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 INTS8Q75QN2 995 aaKnown RBP18.88■□□□□ 0.61
HDDC3-201ENST00000330334 CRYBG2Q8N1P7 616 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 CPA6Q8N4T0 437 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 ATP2A3Q93084 1043 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 CHFRQ96EP1 664 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 ZNF518BQ9C0D4 1074 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 GOLPH3LQ9H4A5 285 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 SMYD3Q9H7B4 428 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 DUS2Q9NX74 493 aaKnown RBP18.88■□□□□ 0.61
HDDC3-201ENST00000330334 DCHS1Q96JQ0 3298 aa18.88■□□□□ 0.61
HDDC3-201ENST00000330334 DMXL1Q9Y485 3027 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 K7ESF4 209 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 ATP8B3O60423 1300 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 OBSL1O75147 1896 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 RTN3O95197 1032 aaPredicted RBP18.87■□□□□ 0.61
HDDC3-201ENST00000330334 OLFM2O95897 454 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 ARSAP15289 507 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 CNR2P34972 360 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 VAMP7P51809 220 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 CACNA2D1P54289 1103 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 SLC7A9P82251 487 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 Q6ZS52 159 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 UNC93AQ86WB7 457 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 NUP93Q8N1F7 819 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 GPR161Q8N6U8 529 aaKnown RBP18.87■□□□□ 0.61
HDDC3-201ENST00000330334 SH3RF2Q8TEC5 729 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 OVCA2Q8WZ82 227 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 SECISBP2LQ93073 1101 aaKnown RBP18.87■□□□□ 0.61
HDDC3-201ENST00000330334 SLITRK1Q96PX8 696 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 ECT2Q9H8V3 914 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 TMEM30AQ9NV96 361 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 COMMD8Q9NX08 183 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 IL37Q9NZH6 218 aa18.87■□□□□ 0.61
HDDC3-201ENST00000330334 ATG13O75143 517 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 AKAP3O75969 853 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 DRD1P21728 446 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 NR2F2P24468 414 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 PSMC2P35998 433 aaKnown RBP18.86■□□□□ 0.61
HDDC3-201ENST00000330334 TAF10Q12962 218 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 BECN1Q14457 450 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 EML3Q32P44 896 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 SNX30Q5VWJ9 437 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 FSTL4Q6MZW2 842 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 PAQR9Q6ZVX9 377 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 PDZD8Q8NEN9 1154 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 SDCBP2Q9H190 292 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 SMG5Q9UPR3 1016 aaKnown RBP18.86■□□□□ 0.61
HDDC3-201ENST00000330334 PTPRDP23468 1912 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 GREB1Q4ZG55 1949 aa18.86■□□□□ 0.61
HDDC3-201ENST00000330334 CLDN5O00501 218 aa18.85■□□□□ 0.61
HDDC3-201ENST00000330334 OAS1P00973 400 aaKnown RBP18.85■□□□□ 0.61
HDDC3-201ENST00000330334 YWHAQP27348 245 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms