RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 POLRMTO00411 1230 aaKnown RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 ZBTB39O15060 712 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 GRAP2O75791 330 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 FAM58BPP0C7Q3 252 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 ADORA2BP29275 332 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 RBP5P82980 135 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 BLMHQ13867 455 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 OTOP1Q7RTM1 612 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 RNF139Q8WU17 664 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 ZNF669Q96BR6 464 aaPredicted RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 GID8Q9NWU2 228 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 EDF1O60869 148 aaKnown RBP20.04■□□□□ 0.8
USP48-201ENST00000308271 CHKAP35790 457 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 SPP2Q13103 211 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 PDPK2PQ6A1A2 396 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 CIAPIN1Q6FI81 312 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 EP400NLQ6ZTU2 488 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 ADNPQ9H2P0 1102 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 SLC5A4Q9NY91 659 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.04■□□□□ 0.8
USP48-201ENST00000308271 CPSF3Q9UKF6 684 aaKnown RBP20.04■□□□□ 0.8
USP48-201ENST00000308271 PSMD3O43242 534 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 RGS2P41220 211 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 OASLQ15646 514 aaKnown RBP20.04■□□□□ 0.8
USP48-201ENST00000308271 KBTBD12Q3ZCT8 623 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 CNTNAP4Q9C0A0 1308 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 FANCGO15287 622 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 KRT36O76013 467 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 TNFAIP8O95379 198 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 SERPINB8P50452 374 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 NME3Q13232 169 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 PDK2Q15119 407 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 TKFCQ3LXA3 575 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 LRP10Q7Z4F1 713 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 SULF1Q8IWU6 871 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 NR1H4Q96RI1 486 aaPredicted RBP20.04■□□□□ 0.8
USP48-201ENST00000308271 NRDE2Q9H7Z3 1164 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 SORCS3Q9UPU3 1222 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 ATP8B3O60423 1300 aa20.04■□□□□ 0.8
USP48-201ENST00000308271 ARHGEF37A1IGU5 675 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 BMT2Q1RMZ1 405 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SLCO1B3Q9NPD5 702 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SERPINB5P36952 375 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 ZNF772Q68DY9 489 aaPredicted RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 NET1Q7Z628 596 aaPredicted RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 FAM13CQ8NE31 585 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 PARD3BQ8TEW8 1205 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 MROH7Q68CQ1 1323 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 E2F8A0AVK6 867 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SDR42E2A6NKP2 422 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SPDYE16A6NNV3 312 aaPredicted RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 DDX3YO15523 660 aaKnown RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 SNX2O60749 519 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 PLOD1Q02809 727 aaPredicted RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 BMPR2Q13873 1038 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SPDYE2Q495Y8 402 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 PIGWQ7Z7B1 504 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 OR6P1Q8NGX9 317 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 RBM46Q8TBY0 533 aaKnown RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 KIF12Q96FN5 646 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 ERVK-5Q9HDB9 667 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 ZNF229Q9UJW7 825 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SLIT3O75094 1523 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 IL18RAPO95256 599 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 SUPT20HL1Q3ZLR7 823 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 C1orf186Q6ZWK4 172 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 TRABD2AQ86V40 505 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 C4orf19Q8IY42 314 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 CYP2W1Q8TAV3 490 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 ZNF668Q96K58 619 aaPredicted RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 NT5C1AQ9BXI3 368 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 RIMS1Q86UR5 1692 aaKnown RBP20.03■□□□□ 0.8
USP48-201ENST00000308271 ROBO3Q96MS0 1386 aa20.03■□□□□ 0.8
USP48-201ENST00000308271 RPL10AP62906 217 aaKnown RBP20.02■□□□□ 0.8
USP48-201ENST00000308271 HYIQ5T013 277 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.02■□□□□ 0.8
USP48-201ENST00000308271 GMCL1P1Q8NEA9 526 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 LCP1P13796 627 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 NEK2P51955 445 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 PPP3CAQ08209 521 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 FAM71AQ8IYT1 594 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 CNDP1Q96KN2 507 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 CGRRF1Q99675 332 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 DMAP1Q9NPF5 467 aaPredicted RBP20.02■□□□□ 0.8
USP48-201ENST00000308271 RPS6KL1Q9Y6S9 549 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.02■□□□□ 0.8
USP48-201ENST00000308271 KBTBD13C9JR72 458 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 H0Y626 953 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 TRIM16O95361 564 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 SERPINE1P05121 402 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 RARRES1P49788 294 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 TPI1P60174 286 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 FAAP100Q0VG06 881 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 SLC9A9Q8IVB4 645 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 RTKN2Q8IZC4 609 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 ZNF786Q8N393 782 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 FITM2Q8N6M3 262 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 PPHLN1Q8NEY8 458 aaKnown RBP20.02■□□□□ 0.8
USP48-201ENST00000308271 PTPRN2Q92932 1015 aa20.02■□□□□ 0.8
USP48-201ENST00000308271 COMMD3-BMI1R4GMX3 469 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms