RNA–Protein interactions for RNA: YLR220W

CCC1, Transcript of Vacuolar Fe2+/Mn2+ transporter, yeast

Gene CCC1, Length 969 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CCC1	YLR220W	GTO3	Q04806	366 aa		11.46	□□□□□ -0.57
CCC1	YLR220W	YPR053C	Q6Q5F3	151 aa		11.46	□□□□□ -0.57
CCC1	YLR220W	YGR017W	P53210	297 aa		11.45	□□□□□ -0.58
CCC1	YLR220W	AIM34	Q03673	198 aa		11.45	□□□□□ -0.58
CCC1	YLR220W	YCR024C-B	Q3E7Z8	88 aa		11.45	□□□□□ -0.58
CCC1	YLR220W	ELF1	P36053	145 aa		11.44	□□□□□ -0.58
CCC1	YLR220W	SDS23	P53172	527 aa		11.44	□□□□□ -0.58
CCC1	YLR220W	FRS1	P15624	595 aa	Known RBP	11.43	□□□□□ -0.58
CCC1	YLR220W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	11.43	□□□□□ -0.58	not detected
CCC1	YLR220W	RPS8A	P0CX39	200 aa	Known RBP	11.42	□□□□□ -0.58
CCC1	YLR220W	RPS8B	P0CX40	200 aa	Known RBP	11.42	□□□□□ -0.58
CCC1	YLR220W	RPL23A	P0CX41	137 aa	Known RBP	11.42	□□□□□ -0.58
CCC1	YLR220W	RPL23B	P0CX42	137 aa	Known RBP	11.42	□□□□□ -0.58
CCC1	YLR220W	FSF1	Q12029	327 aa	Known RBP	11.42	□□□□□ -0.58
CCC1	YLR220W	YBR126W-A	Q8TGU7	68 aa		11.42	□□□□□ -0.58
CCC1	YLR220W	YCR075W-A	Q3E830	75 aa		11.41	□□□□□ -0.58
CCC1	YLR220W	YCR001W	P25347	104 aa		11.4	□□□□□ -0.58
CCC1	YLR220W	YPS5	P53057	165 aa		11.4	□□□□□ -0.58
CCC1	YLR220W	CYT2	Q00873	224 aa		11.4	□□□□□ -0.58
CCC1	YLR220W	SDH8	P38345	138 aa		11.38	□□□□□ -0.59
CCC1	YLR220W	YGR149W	P48236	432 aa		11.38	□□□□□ -0.59
CCC1	YLR220W	SGF11	Q03067	99 aa		11.38	□□□□□ -0.59
CCC1	YLR220W	SEC4	P07560	215 aa	Known RBP	11.37	□□□□□ -0.59
CCC1	YLR220W	YKR032W	P36127	104 aa		11.37	□□□□□ -0.59
CCC1	YLR220W	MRPL33	P20084	86 aa		11.36	□□□□□ -0.59
CCC1	YLR220W	DXO1	Q06349	442 aa		11.36	□□□□□ -0.59
CCC1	YLR220W	MRPL28	P36527	147 aa		11.35	□□□□□ -0.59
CCC1	YLR220W	ARL3	Q02804	198 aa		11.35	□□□□□ -0.59
CCC1	YLR220W	TVP18	Q04767	167 aa		11.35	□□□□□ -0.59
CCC1	YLR220W	YLR042C	Q07990	161 aa		11.35	□□□□□ -0.59
CCC1	YLR220W	ATP16	Q12165	160 aa		11.35	□□□□□ -0.59
CCC1	YLR220W	YCR023C	P25351	611 aa		11.34	□□□□□ -0.59
CCC1	YLR220W	YGR240C-A	Q3E786	66 aa		11.34	□□□□□ -0.59
CCC1	YLR220W	RPL42A	P0CX27	106 aa	Known RBP	11.32	□□□□□ -0.6
CCC1	YLR220W	RPL42B	P0CX28	106 aa	Known RBP	11.32	□□□□□ -0.6
CCC1	YLR220W	PET8	P38921	284 aa		11.32	□□□□□ -0.6
CCC1	YLR220W	HAL1	Q01766	294 aa		11.32	□□□□□ -0.6
CCC1	YLR220W	KTI12	P34253	313 aa	Known RBP	11.31	□□□□□ -0.6
CCC1	YLR220W	KRE9	P39005	276 aa		11.31	□□□□□ -0.6
CCC1	YLR220W	WIP1	Q2V2P8	89 aa		11.31	□□□□□ -0.6
CCC1	YLR220W	YNL217W	P40152	326 aa		11.3	□□□□□ -0.6
CCC1	YLR220W	MGR2	Q02889	113 aa		11.27	□□□□□ -0.61
CCC1	YLR220W	TEM1	P38987	245 aa		11.26	□□□□□ -0.61
CCC1	YLR220W	YGL118C	P53132	145 aa		11.26	□□□□□ -0.61
CCC1	YLR220W	SAL1	D6W196	494 aa		11.25	□□□□□ -0.61
CCC1	YLR220W	YNL200C	P40165	246 aa	Known RBP	11.25	□□□□□ -0.61
CCC1	YLR220W	MED7	Q08278	222 aa		11.25	□□□□□ -0.61
CCC1	YLR220W	DGA1	Q08650	418 aa		11.25	□□□□□ -0.61
CCC1	YLR220W	CMC2	Q3E7A4	109 aa		11.25	□□□□□ -0.61
CCC1	YLR220W	PFY1	P07274	126 aa		11.24	□□□□□ -0.61
CCC1	YLR220W	YIL014C-A	Q02598	104 aa		11.24	□□□□□ -0.61
CCC1	YLR220W	CDC40	P40968	455 aa	Predicted RBP	11.23	□□□□□ -0.61
CCC1	YLR220W	DCV1	P43595	202 aa		11.23	□□□□□ -0.61
CCC1	YLR220W	ATP23	P53722	227 aa		11.23	□□□□□ -0.61
CCC1	YLR220W	UBC5	P15732	148 aa		11.22	□□□□□ -0.61
CCC1	YLR220W	GSP1	P32835	219 aa	Known RBP	11.22	□□□□□ -0.61
CCC1	YLR220W	GSP2	P32836	220 aa	Known RBP	11.22	□□□□□ -0.61
CCC1	YLR220W	SEC72	P39742	193 aa	Known RBP	11.22	□□□□□ -0.61
CCC1	YLR220W	CUE4	Q04201	117 aa	Predicted RBP	11.21	□□□□□ -0.61
CCC1	YLR220W	YKR070W	P36151	352 aa	Known RBP	11.2	□□□□□ -0.62
CCC1	YLR220W	YER076C	P40049	302 aa		11.2	□□□□□ -0.62
CCC1	YLR220W	FCF1	Q05498	189 aa	Predicted RBP	11.2	□□□□□ -0.62
CCC1	YLR220W	GLO1	P50107	326 aa		11.19	□□□□□ -0.62
CCC1	YLR220W	CRC1	Q12289	327 aa		11.19	□□□□□ -0.62
CCC1	YLR220W	YER134C	P40081	178 aa		11.18	□□□□□ -0.62
CCC1	YLR220W	PMP3	P87284	55 aa		11.18	□□□□□ -0.62
CCC1	YLR220W	TOS6	P48560	102 aa		11.17	□□□□□ -0.62
CCC1	YLR220W	YPR014C	Q6B0W2	109 aa		11.17	□□□□□ -0.62
CCC1	YLR220W	AQY1	P0CD91	305 aa		11.16	□□□□□ -0.62
CCC1	YLR220W	SSS1	P35179	80 aa		11.16	□□□□□ -0.62
CCC1	YLR220W	PRE1	P22141	198 aa	Known RBP	11.15	□□□□□ -0.62
CCC1	YLR220W	YPT53	P36019	220 aa		11.15	□□□□□ -0.62
CCC1	YLR220W	MDN1	Q12019	4910 aa	Known RBP	11.14	□□□□□ -0.63
CCC1	YLR220W	MRP49	P32388	137 aa		11.14	□□□□□ -0.63
CCC1	YLR220W	OST3	P48439	350 aa		11.14	□□□□□ -0.63
CCC1	YLR220W	ERG27	Q12452	347 aa	Known RBP	11.14	□□□□□ -0.63
CCC1	YLR220W	YGL015C	P33199	130 aa		11.13	□□□□□ -0.63
CCC1	YLR220W	RPR2	P40571	144 aa		11.13	□□□□□ -0.63
CCC1	YLR220W	YDR042C	Q03205	200 aa		11.12	□□□□□ -0.63
CCC1	YLR220W	HTL1	Q9URQ5	78 aa		11.12	□□□□□ -0.63
CCC1	YLR220W	ERI1	P62651	68 aa	Known RBP	11.11	□□□□□ -0.63
CCC1	YLR220W	YMR122W-A	Q3E842	84 aa		11.11	□□□□□ -0.63
CCC1	YLR220W	PCL2	P25693	308 aa		11.1	□□□□□ -0.63
CCC1	YLR220W	SPC1	P46965	94 aa		11.1	□□□□□ -0.63
CCC1	YLR220W	YJL028W	P47062	111 aa		11.1	□□□□□ -0.63
CCC1	YLR220W	YJR146W	P47174	117 aa		11.1	□□□□□ -0.63
CCC1	YLR220W	RPL16A	P26784	199 aa	Known RBP	11.09	□□□□□ -0.63
CCC1	YLR220W	YOR008C-A	Q3E7B9	74 aa		11.09	□□□□□ -0.63
CCC1	YLR220W	ERV14	P53173	138 aa		11.08	□□□□□ -0.64
CCC1	YLR220W	DPP1	Q05521	289 aa		11.08	□□□□□ -0.64
CCC1	YLR220W	POP3	P53833	195 aa	Predicted RBP	11.07	□□□□□ -0.64
CCC1	YLR220W	ARC15	P40518	154 aa	RIP-Chip data	11.06	□□□□□ -0.64	not detected
CCC1	YLR220W	SEN15	Q04675	128 aa		11.06	□□□□□ -0.64
CCC1	YLR220W	COA6	Q3E846	104 aa		11.06	□□□□□ -0.64
CCC1	YLR220W	TRP1	P00912	224 aa		11.05	□□□□□ -0.64
CCC1	YLR220W	YLL066W-B	Q8TGJ7	56 aa		11.05	□□□□□ -0.64
CCC1	YLR220W	RPL27B	P0C2H7	136 aa	Known RBP	11.04	□□□□□ -0.64
CCC1	YLR220W	YIL134C-A	Q45U18	67 aa		11.04	□□□□□ -0.64
CCC1	YLR220W	PAU16	P35994	123 aa		11.03	□□□□□ -0.64
CCC1	YLR220W	YLR112W	Q12130	139 aa		11.03	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 63 ms