RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	GSP1	P32835	219 aa	Known RBP	10.59	□□□□□ -0.71
DEP1	YAL013W	GSP2	P32836	220 aa	Known RBP	10.59	□□□□□ -0.71
DEP1	YAL013W	YER134C	P40081	178 aa		10.59	□□□□□ -0.71
DEP1	YAL013W	KEG1	P43614	200 aa		10.59	□□□□□ -0.71
DEP1	YAL013W	ERG27	Q12452	347 aa	Known RBP	10.59	□□□□□ -0.71
DEP1	YAL013W	PET8	P38921	284 aa		10.58	□□□□□ -0.72
DEP1	YAL013W	YNL200C	P40165	246 aa	Known RBP	10.58	□□□□□ -0.72
DEP1	YAL013W	YGL118C	P53132	145 aa		10.58	□□□□□ -0.72
DEP1	YAL013W	YDR366C	P87287	132 aa		10.58	□□□□□ -0.72
DEP1	YAL013W	COA6	Q3E846	104 aa		10.58	□□□□□ -0.72
DEP1	YAL013W	TEM1	P38987	245 aa		10.57	□□□□□ -0.72
DEP1	YAL013W	WIP1	Q2V2P8	89 aa		10.57	□□□□□ -0.72
DEP1	YAL013W	RPS11A	P0CX47	156 aa	Known RBP	10.56	□□□□□ -0.72
DEP1	YAL013W	RPS11B	P0CX48	156 aa	Known RBP	10.56	□□□□□ -0.72
DEP1	YAL013W	DUO1	P53168	247 aa	Known RBP	10.56	□□□□□ -0.72
DEP1	YAL013W	YIL134C-A	Q45U18	67 aa		10.56	□□□□□ -0.72
DEP1	YAL013W	CYC7	P00045	113 aa		10.55	□□□□□ -0.72
DEP1	YAL013W	RPL2A	P0CX45	254 aa	Known RBP	10.55	□□□□□ -0.72
DEP1	YAL013W	RPL2B	P0CX46	254 aa	Known RBP	10.55	□□□□□ -0.72
DEP1	YAL013W	CDC40	P40968	455 aa	Predicted RBP	10.55	□□□□□ -0.72
DEP1	YAL013W	Q0255	P03881	472 aa		10.54	□□□□□ -0.72
DEP1	YAL013W	RPL16B	P26785	198 aa	Known RBP	10.54	□□□□□ -0.72
DEP1	YAL013W	ELF1	P36053	145 aa		10.54	□□□□□ -0.72
DEP1	YAL013W	VHS2	P40463	436 aa		10.54	□□□□□ -0.72
DEP1	YAL013W	YPR053C	Q6Q5F3	151 aa		10.54	□□□□□ -0.72
DEP1	YAL013W	SEC72	P39742	193 aa	Known RBP	10.53	□□□□□ -0.72
DEP1	YAL013W	YJL028W	P47062	111 aa		10.53	□□□□□ -0.72
DEP1	YAL013W	RRT13	P40042	185 aa		10.52	□□□□□ -0.73
DEP1	YAL013W	YIL014C-A	Q02598	104 aa		10.52	□□□□□ -0.73
DEP1	YAL013W	MGR2	Q02889	113 aa		10.51	□□□□□ -0.73
DEP1	YAL013W	AIM34	Q03673	198 aa		10.51	□□□□□ -0.73
DEP1	YAL013W	MLF3	P32047	452 aa		10.5	□□□□□ -0.73
DEP1	YAL013W	YCH1	P42937	148 aa		10.5	□□□□□ -0.73
DEP1	YAL013W	LSM8	P47093	109 aa	Known RBP	10.5	□□□□□ -0.73
DEP1	YAL013W	COX12	Q01519	83 aa		10.5	□□□□□ -0.73
DEP1	YAL013W	TVP18	Q04767	167 aa		10.5	□□□□□ -0.73
DEP1	YAL013W	AIR2	Q12476	344 aa	Known RBP	10.5	□□□□□ -0.73
DEP1	YAL013W	KTI12	P34253	313 aa	Known RBP	10.49	□□□□□ -0.73
DEP1	YAL013W	MRPL11	P36521	249 aa	Predicted RBP	10.49	□□□□□ -0.73
DEP1	YAL013W	PAU16	P35994	123 aa		10.48	□□□□□ -0.73
DEP1	YAL013W	YLR281C	Q05863	155 aa		10.48	□□□□□ -0.73
DEP1	YAL013W	PFY1	P07274	126 aa		10.47	□□□□□ -0.73
DEP1	YAL013W	RPL42A	P0CX27	106 aa	Known RBP	10.47	□□□□□ -0.73
DEP1	YAL013W	RPL42B	P0CX28	106 aa	Known RBP	10.47	□□□□□ -0.73
DEP1	YAL013W	SAL1	D6W196	494 aa		10.46	□□□□□ -0.73
DEP1	YAL013W	ERV14	P53173	138 aa		10.46	□□□□□ -0.73
DEP1	YAL013W	YER076C	P40049	302 aa		10.45	□□□□□ -0.74
DEP1	YAL013W	FCF1	Q05498	189 aa	Predicted RBP	10.45	□□□□□ -0.74
DEP1	YAL013W	MSC3	Q05812	728 aa		10.45	□□□□□ -0.74
DEP1	YAL013W	YLR042C	Q07990	161 aa		10.44	□□□□□ -0.74
DEP1	YAL013W	YPR014C	Q6B0W2	109 aa		10.44	□□□□□ -0.74
DEP1	YAL013W	PRE1	P22141	198 aa	Known RBP	10.43	□□□□□ -0.74
DEP1	YAL013W	YCR023C	P25351	611 aa		10.43	□□□□□ -0.74
DEP1	YAL013W	CGR1	P53188	120 aa		10.43	□□□□□ -0.74
DEP1	YAL013W	YDR042C	Q03205	200 aa		10.43	□□□□□ -0.74
DEP1	YAL013W	AQY1	P0CD91	305 aa		10.42	□□□□□ -0.74
DEP1	YAL013W	ATP23	P53722	227 aa		10.42	□□□□□ -0.74
DEP1	YAL013W	POP3	P53833	195 aa	Predicted RBP	10.42	□□□□□ -0.74
DEP1	YAL013W	NRG2	P38082	220 aa		10.41	□□□□□ -0.74
DEP1	YAL013W	TOS6	P48560	102 aa		10.41	□□□□□ -0.74
DEP1	YAL013W	CNL1	Q06333	122 aa		10.41	□□□□□ -0.74
DEP1	YAL013W	HTL1	Q9URQ5	78 aa		10.41	□□□□□ -0.74
DEP1	YAL013W	YPS5	P53057	165 aa		10.4	□□□□□ -0.74
DEP1	YAL013W	DPP1	Q05521	289 aa		10.4	□□□□□ -0.74
DEP1	YAL013W	TPT1	Q12272	230 aa	Known RBP	10.4	□□□□□ -0.74
DEP1	YAL013W	DCV1	P43595	202 aa		10.39	□□□□□ -0.75
DEP1	YAL013W	YLR122C	Q12312	125 aa		10.39	□□□□□ -0.75
DEP1	YAL013W	YKR070W	P36151	352 aa	Known RBP	10.38	□□□□□ -0.75
DEP1	YAL013W	GLO1	P50107	326 aa		10.38	□□□□□ -0.75
DEP1	YAL013W	YBR126W-A	Q8TGU7	68 aa		10.38	□□□□□ -0.75
DEP1	YAL013W	FUN14	P18411	198 aa		10.37	□□□□□ -0.75
DEP1	YAL013W	VAM10	Q08474	114 aa		10.37	□□□□□ -0.75
DEP1	YAL013W	PCL2	P25693	308 aa		10.36	□□□□□ -0.75
DEP1	YAL013W	RPL27B	P0C2H7	136 aa	Known RBP	10.35	□□□□□ -0.75
DEP1	YAL013W	SCM4	P32564	187 aa		10.35	□□□□□ -0.75
DEP1	YAL013W	KRE9	P39005	276 aa		10.35	□□□□□ -0.75
DEP1	YAL013W	YNL217W	P40152	326 aa		10.35	□□□□□ -0.75
DEP1	YAL013W	YLR112W	Q12130	139 aa		10.35	□□□□□ -0.75
DEP1	YAL013W	YCR001W	P25347	104 aa		10.34	□□□□□ -0.75
DEP1	YAL013W	AUA1	P32450	94 aa		10.34	□□□□□ -0.75
DEP1	YAL013W	FYV7	Q12247	151 aa		10.34	□□□□□ -0.75
DEP1	YAL013W	YCR075W-A	Q3E830	75 aa		10.34	□□□□□ -0.75
DEP1	YAL013W	YLR050C	Q12155	161 aa	Known RBP	10.33	□□□□□ -0.76
DEP1	YAL013W	SEC11	P15367	167 aa		10.32	□□□□□ -0.76
DEP1	YAL013W	HAC1	P41546	238 aa		10.32	□□□□□ -0.76
DEP1	YAL013W	DGA1	Q08650	418 aa		10.32	□□□□□ -0.76
DEP1	YAL013W	UBC5	P15732	148 aa		10.31	□□□□□ -0.76
DEP1	YAL013W	RDS3	Q06835	107 aa	Predicted RBP	10.31	□□□□□ -0.76
DEP1	YAL013W	YGR240C-A	Q3E786	66 aa		10.31	□□□□□ -0.76
DEP1	YAL013W	COA3	Q3E7B2	85 aa		10.31	□□□□□ -0.76
DEP1	YAL013W	FYV4	P38783	130 aa	Predicted RBP	10.3	□□□□□ -0.76
DEP1	YAL013W	YJR146W	P47174	117 aa		10.3	□□□□□ -0.76
DEP1	YAL013W	YOR008C-A	Q3E7B9	74 aa		10.3	□□□□□ -0.76
DEP1	YAL013W	MRPL44	P19956	98 aa		10.29	□□□□□ -0.76
DEP1	YAL013W	YGL230C	P53074	147 aa		10.29	□□□□□ -0.76
DEP1	YAL013W	YDL157C	Q12082	118 aa		10.29	□□□□□ -0.76
DEP1	YAL013W	RPL16A	P26784	199 aa	Known RBP	10.28	□□□□□ -0.76
DEP1	YAL013W	YMR103C	Q04436	120 aa		10.28	□□□□□ -0.76
DEP1	YAL013W	SCW10	Q04951	389 aa		10.28	□□□□□ -0.76
DEP1	YAL013W	HMRA2	P0CY13	119 aa		10.27	□□□□□ -0.77

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