RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 UBR7Q8N806 425 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 CYFIP2Q96F07 1278 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 ZNF518BQ9C0D4 1074 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 IGSF9Q9P2J2 1179 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 KIAA1257Q9ULG3 409 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 C5orf42Q9H799 3197 aa27.36■■□□□ 1.97
TRIM28-204ENST00000594806 GREB1Q4ZG55 1949 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 SLC38A8A6NNN8 435 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 GPR15P49685 360 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 ZNF165P49910 485 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 RAD23BP54727 409 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 NCAPHQ15003 741 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 NFKBIBQ15653 356 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 PAQR9Q6ZVX9 377 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 NPAS3Q8IXF0 933 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 SLC4A11Q8NBS3 891 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 HEXIM2Q96MH2 286 aaKnown RBP27.35■■□□□ 1.97
TRIM28-204ENST00000594806 GCNAQ96QF7 691 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 CRACR2AQ9BSW2 395 aa27.35■■□□□ 1.97
TRIM28-204ENST00000594806 A0A0C4DFX4 3053 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 SOBPA7XYQ1 873 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 CLDN5O00501 218 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 HMGA1P17096 107 aaKnown RBP27.34■■□□□ 1.97
TRIM28-204ENST00000594806 CDK11BP21127 795 aaKnown RBP27.34■■□□□ 1.97
TRIM28-204ENST00000594806 CCR2P41597 374 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 ORC1Q13415 861 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 ZNF394Q53GI3 561 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 PHLDB3Q6NSJ2 640 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 DENND5BQ6ZUT9 1274 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 AOPEPQ8N6M6 819 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 C12orf29Q8N999 325 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 SLC2A14Q8TDB8 520 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 DMAP1Q9NPF5 467 aaPredicted RBP27.34■■□□□ 1.97
TRIM28-204ENST00000594806 LIMD1Q9UGP4 676 aa27.34■■□□□ 1.97
TRIM28-204ENST00000594806 LRRC10BA6NIK2 292 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 F8VP50 259 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 PAEPP09466 180 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 ZNF18P17022 549 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 PON1P27169 355 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 GABRR2P28476 465 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 MFAP3P55082 362 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 KRT31Q15323 416 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 ZSCAN23Q3MJ62 389 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 ARHGAP17Q68EM7 881 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 MTSS1LQ765P7 747 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 RRAGAQ7L523 313 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 GPR152Q8TDT2 470 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 TCEAL4Q96EI5 215 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 CSNK1G1Q9HCP0 422 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 ZNF334Q9HCZ1 680 aaPredicted RBP27.33■■□□□ 1.97
TRIM28-204ENST00000594806 FAM49BQ9NUQ9 324 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 COMMD8Q9NX08 183 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 APEX2Q9UBZ4 518 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 LIMA1Q9UHB6 759 aaKnown RBP27.33■■□□□ 1.97
TRIM28-204ENST00000594806 DENND4CQ5VZ89 1909 aa27.33■■□□□ 1.97
TRIM28-204ENST00000594806 PES1O00541 588 aaKnown RBP27.32■■□□□ 1.96
TRIM28-204ENST00000594806 DLL1O00548 723 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 MOSPD3O75425 235 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 AP1G2O75843 785 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 FAM200BP0CF97 657 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 CCDC130P13994 396 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 CEBPBP17676 345 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 SLC9A1P19634 815 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 ACO1P21399 889 aaKnown RBP27.32■■□□□ 1.96
TRIM28-204ENST00000594806 ARHGAP15Q53QZ3 475 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 SDHAF4Q5VUM1 108 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 GAREM2Q75VX8 874 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 ARHGEF19Q8IW93 802 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 SHKBP1Q8TBC3 707 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 ATXN3LQ9H3M9 355 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 IL21Q9HBE4 155 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 UBE2TQ9NPD8 197 aaPredicted RBP27.32■■□□□ 1.96
TRIM28-204ENST00000594806 KRT82Q9NSB4 513 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 TAB2Q9NYJ8 693 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 CNTN6Q9UQ52 1028 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 PCDHB4Q9Y5E5 795 aa27.32■■□□□ 1.96
TRIM28-204ENST00000594806 A0A1W2PRU2 124 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 BECN2A8MW95 431 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 RTN3O95197 1032 aaPredicted RBP27.31■■□□□ 1.96
TRIM28-204ENST00000594806 VDRP11473 427 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 ALADP13716 330 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 DDX6P26196 483 aaKnown RBP eCLIP27.31■■□□□ 1.962e-8■□□□□ 8.4
TRIM28-204ENST00000594806 TMEM270Q6UE05 265 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 ING5Q8WYH8 240 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 TTLL2Q9BWV7 592 aa27.31■■□□□ 1.96
TRIM28-204ENST00000594806 MAGED2Q9UNF1 606 aaPredicted RBP27.31■■□□□ 1.96
TRIM28-204ENST00000594806 ZNF638Q14966 1978 aaKnown RBP27.3■■□□□ 1.96
TRIM28-204ENST00000594806 ANHXE9PGG2 379 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 F11P03951 625 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 PPP3CCP48454 512 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 TEAD2Q15562 447 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 SGO2Q562F6 1265 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 FKBP15Q5T1M5 1219 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 PPP1R26Q5T8A7 1209 aaPredicted RBP27.3■■□□□ 1.96
TRIM28-204ENST00000594806 DHX40Q8IX18 779 aaKnown RBP27.3■■□□□ 1.96
TRIM28-204ENST00000594806 NUP93Q8N1F7 819 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 MCRS1Q96EZ8 462 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 KREMEN1Q96MU8 473 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 HSD3B7Q9H2F3 369 aa27.3■■□□□ 1.96
TRIM28-204ENST00000594806 KCNK12Q9HB15 430 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms