RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 AVENQ9NQS1 362 aaPredicted RBP9.82□□□□□ -0.84
VPS35-206ENST00000565228 TAB2Q9NYJ8 693 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 EPS15L1Q9UBC2 864 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 HSFX1Q9UBD0 423 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 PRKAG3Q9UGI9 489 aa9.82□□□□□ -0.84
VPS35-206ENST00000565228 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.82□□□□□ -0.84
VPS35-206ENST00000565228 KIF26AQ9ULI4 1882 aaPredicted RBP9.81□□□□□ -0.84
VPS35-206ENST00000565228 A0A1W2PRU2 124 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 SPDYE4A6NLX3 237 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 ANHXE9PGG2 379 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 F8VP50 259 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 NOL4O94818 638 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 GNA14O95837 355 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 LRG1P02750 347 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 MYL4P12829 197 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 LAMP2P13473 410 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 PTPN2P17706 415 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 PCSK1P29120 753 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 ZNF132P52740 706 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 ZXDBP98169 803 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 TSPY1Q01534 308 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 CYP27A1Q02318 531 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 ZSCAN23Q3MJ62 389 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 VWA3BQ502W6 1294 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 TCP11X2Q5H9J9 407 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 PPP1R26Q5T8A7 1209 aaPredicted RBP9.81□□□□□ -0.84
VPS35-206ENST00000565228 TRIM65Q6PJ69 517 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 SASS6Q6UVJ0 657 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 CYP26C1Q6V0L0 522 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 TTC30AQ86WT1 665 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 CREBRFQ8IUR6 639 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 SPATA2LQ8IUW3 424 aaPredicted RBP9.81□□□□□ -0.84
VPS35-206ENST00000565228 ZDHHC14Q8IZN3 488 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 AOPEPQ8N6M6 819 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 SLC2A14Q8TDB8 520 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 MCRS1Q96EZ8 462 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 NECTIN4Q96NY8 510 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 TUBGCP2Q9BSJ2 902 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 SMG9Q9H0W8 520 aaKnown RBP9.81□□□□□ -0.84
VPS35-206ENST00000565228 CYP3A43Q9HB55 503 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 ABCB6Q9NP58 842 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 MAFFQ9ULX9 164 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 NUP210Q8TEM1 1887 aaPredicted RBP9.81□□□□□ -0.84
VPS35-206ENST00000565228 MYO16Q9Y6X6 1858 aa9.81□□□□□ -0.84
VPS35-206ENST00000565228 MUC6Q6W4X9 2439 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 SHISA7A6NL88 538 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 PRAMEF12O95522 483 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 CCDC192P0DO97 292 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 ADORA2BP29275 332 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 MAGEA11P43364 429 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 MTIF2P46199 727 aaKnown RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 HTR4Q13639 388 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 NFE2Q16621 373 aaPredicted RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 MAN2A1Q16706 1144 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 PKDCCQ504Y2 493 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 CT47A1Q5JQC4 288 aaPredicted RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 FAM78AQ5JUQ0 283 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 TANGO2Q6ICL3 276 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 CLEC20AQ6ZU45 233 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 RTL10Q7L3V2 364 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 UNC93AQ86WB7 457 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 SCN4BQ8IWT1 228 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 SCAMP5Q8TAC9 235 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 C2orf15Q8WU43 125 aaKnown RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 FUBP3Q96I24 572 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS35-206ENST00000565228 ZNF512Q96ME7 567 aaPredicted RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 SLC46A2Q9BY10 475 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 NDST4Q9H3R1 872 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 KCNK12Q9HB15 430 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 CBX8Q9HC52 389 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 ANO10Q9NW15 660 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 GCNT4Q9P109 453 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 MAGEC2Q9UBF1 373 aaPredicted RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 CDH7Q9ULB5 785 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 CNTN6Q9UQ52 1028 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 USTQ9Y2C2 406 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 MRPS23Q9Y3D9 190 aaKnown RBP9.8□□□□□ -0.84
VPS35-206ENST00000565228 NUMBLQ9Y6R0 609 aa9.8□□□□□ -0.84
VPS35-206ENST00000565228 P4HA2O15460 535 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TEX33O43247 280 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 STX10O60499 249 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 XYLBO75191 536 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 GABRR2P28476 465 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 GBP2P32456 591 aaPredicted RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 VIPR2P41587 438 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 ALDH1A3P47895 512 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TUFMP49411 452 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 COPB1P53618 953 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 SMARCB1Q12824 385 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TXNDC8Q6A555 127 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 IQCEQ6IPM2 695 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 BHLHA9Q7RTU4 235 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TDRD5Q8NAT2 981 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 OLIG1Q8TAK6 271 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 NDRG1Q92597 394 aaKnown RBP9.79□□□□□ -0.84
VPS35-206ENST00000565228 WBP2Q969T9 261 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 CYFIP2Q96F07 1278 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 TMEM176AQ96HP8 235 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 C8orf48Q96LL4 319 aa9.79□□□□□ -0.84
VPS35-206ENST00000565228 MYRFLQ96LU7 910 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms