RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 DNASE1L2Q92874 299 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 IRF7Q92985 503 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 EEF2KMTQ96G04 330 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 MED15Q96RN5 788 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 THAP9Q9H5L6 903 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 SPTBN4Q9H254 2564 aa16.75■□□□□ 0.27
USB1-208ENST00000563207 FAM186AA6NE01 2351 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 C4BPAP04003 597 aaKnown RBP16.74■□□□□ 0.27
USB1-208ENST00000563207 HAPLN1P10915 354 aaPredicted RBP16.74■□□□□ 0.27
USB1-208ENST00000563207 ATICP31939 592 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 MYO1EQ12965 1108 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 GAS6Q14393 721 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 ZSCAN23Q3MJ62 389 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 ZACNQ401N2 412 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 TXNDC11Q6PKC3 985 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 SUMF1Q8NBK3 374 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 FAM3CQ92520 227 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 ZNF516Q92618 1163 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 BPIFA3Q9BQP9 254 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 PI4K2AQ9BTU6 479 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 SLC46A2Q9BY10 475 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 LMAN1LQ9HAT1 526 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 TMEM8AQ9HCN3 771 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 RBM12Q9NTZ6 932 aaKnown RBP16.74■□□□□ 0.27
USB1-208ENST00000563207 GTSE1Q9NYZ3 720 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 DSEQ9UL01 958 aa16.74■□□□□ 0.27
USB1-208ENST00000563207 SYCE3A1L190 88 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 PHACTR2O75167 634 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 STAU1O95793 577 aaKnown RBP16.73■□□□□ 0.27
USB1-208ENST00000563207 KRT19P08727 400 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 HMGA1P17096 107 aaKnown RBP16.73■□□□□ 0.27
USB1-208ENST00000563207 DLG4P78352 724 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 TNK2Q07912 1038 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 TRPC3Q13507 836 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 C1orf220Q5T0J3 134 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 KRT39Q6A163 491 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 KIAA2013Q8IYS2 634 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 THEM5Q8N1Q8 247 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 DEPDC1BQ8WUY9 529 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 NELL2Q99435 816 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 FUCA2Q9BTY2 467 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 C2orf42Q9NWW7 574 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 ASB3Q9Y575 518 aa16.73■□□□□ 0.27
USB1-208ENST00000563207 PMM2O15305 246 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 ATP2C2O75185 946 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 CYP2F1P24903 491 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 RPS9P46781 194 aaKnown RBP16.72■□□□□ 0.27
USB1-208ENST00000563207 MYL5Q02045 173 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 FCHO2Q0JRZ9 810 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 BIRC3Q13489 604 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 ANO6Q4KMQ2 910 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 TCERG1LQ5VWI1 586 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 TDRD10Q5VZ19 366 aaKnown RBP16.72■□□□□ 0.27
USB1-208ENST00000563207 C11orf57Q6ZUT1 292 aaPredicted RBP16.72■□□□□ 0.27
USB1-208ENST00000563207 SV2AQ7L0J3 742 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 TRIM59Q8IWR1 403 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 RIN3Q8TB24 985 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 TAF4BQ92750 862 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 SLC35C1Q96A29 364 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 HPDLQ96IR7 371 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 PKMYT1Q99640 499 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 GPR88Q9GZN0 384 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 VRTNQ9H8Y1 702 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 TRPV5Q9NQA5 729 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 GDAP2Q9NXN4 497 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 DDX43Q9NXZ2 648 aaKnown RBP16.72■□□□□ 0.27
USB1-208ENST00000563207 MAGEC2Q9UBF1 373 aaPredicted RBP16.72■□□□□ 0.27
USB1-208ENST00000563207 GTF3C4Q9UKN8 822 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 FBXO4Q9UKT5 387 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 CCL26Q9Y258 94 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 SNX9Q9Y5X1 595 aa16.72■□□□□ 0.27
USB1-208ENST00000563207 P4HA2O15460 535 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 CST3P01034 146 aaPredicted RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 FAM163BP0C2L3 166 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 TRIM49P0CI25 452 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 TRIM49CP0CI26 452 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 CHRNB1P11230 501 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 TDGF1P13385 188 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 LMO2P25791 158 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 TUFMP49411 452 aaKnown RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 PPP3CAQ08209 521 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 CETN1Q12798 172 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 NCOA4Q13772 614 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 DDR2Q16832 855 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 SGSM1Q2NKQ1 1148 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 DCAF17Q5H9S7 520 aaPredicted RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 DPH6Q7L8W6 267 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 ITIH5Q86UX2 942 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 SPATA18Q8TC71 538 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 NELL1Q92832 810 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 CNOT6LQ96LI5 555 aaKnown RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 IMPG2Q9BZV3 1241 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 TASP1Q9H6P5 420 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 HSFX1Q9UBD0 423 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 MAGED2Q9UNF1 606 aaPredicted RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 MRPS17Q9Y2R5 130 aaKnown RBP16.71■□□□□ 0.27
USB1-208ENST00000563207 NFE2L3Q9Y4A8 694 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 PCDHB5Q9Y5E4 795 aa16.71■□□□□ 0.27
USB1-208ENST00000563207 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.71■□□□□ 0.27
USB1-208ENST00000563207 F5P12259 2224 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms