RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 CYP2F1P24903 491 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 LHX1P48742 406 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 GPR15P49685 360 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 INTS6LQ5JSJ4 861 aaKnown RBP18.16■□□□□ 0.5
VPS29-204ENST00000548259 SDHAF4Q5VUM1 108 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 SLC39A4Q6P5W5 647 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 SYT12Q8IV01 421 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 SCN4BQ8IWT1 228 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 HDDC3Q8N4P3 179 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 ARL14EPQ8N8R7 260 aaPredicted RBP18.16■□□□□ 0.5
VPS29-204ENST00000548259 EZH1Q92800 747 aaPredicted RBP18.16■□□□□ 0.5
VPS29-204ENST00000548259 TMEM121BQ9BXQ6 578 aaPredicted RBP18.16■□□□□ 0.5
VPS29-204ENST00000548259 TMLHEQ9NVH6 421 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 BCCIPQ9P287 314 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS29-204ENST00000548259 ARHGAP26Q9UNA1 814 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 LHX6Q9UPM6 363 aa18.16■□□□□ 0.5
VPS29-204ENST00000548259 PATE3B3GLJ2 98 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 TADA3O75528 432 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 BCKDHBP21953 392 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 HOXD12P35452 270 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 MAPK8P45983 427 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 TFAMQ00059 246 aaKnown RBP18.15■□□□□ 0.5
VPS29-204ENST00000548259 CFAP221Q4G0U5 840 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 EOGTQ5NDL2 527 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 LRSAM1Q6UWE0 723 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 C4orf50Q6ZRC1 276 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 PDCL2Q8N4E4 241 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 CCDC33Q8N5R6 958 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 LRRC52Q8N7C0 313 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 KIAA1958Q8N8K9 716 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 KRI1Q8N9T8 703 aaKnown RBP18.15■□□□□ 0.5
VPS29-204ENST00000548259 MDGA1Q8NFP4 955 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 CEP76Q8TAP6 659 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 HVCN1Q96D96 273 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 CEP295NLQ96MC4 621 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 GTF3C4Q9UKN8 822 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 EXOC7Q9UPT5 735 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 MSRB2Q9Y3D2 182 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 STYXL1Q9Y6J8 313 aa18.15■□□□□ 0.5
VPS29-204ENST00000548259 ANKRD63C9JTQ0 380 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 K7EQS6 105 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 TOP3BO95985 862 aaKnown RBP18.14■□□□□ 0.49
VPS29-204ENST00000548259 POLR2BP30876 1174 aaKnown RBP18.14■□□□□ 0.49
VPS29-204ENST00000548259 P2RY2P41231 377 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 SIM1P81133 766 aaPredicted RBP18.14■□□□□ 0.49
VPS29-204ENST00000548259 MAPRE1Q15691 268 aaKnown RBP18.14■□□□□ 0.49
VPS29-204ENST00000548259 LYSMD4Q5XG99 296 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 KIAA1211LQ6NV74 962 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 RABEPKQ7Z6M1 372 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 STKLD1Q8NE28 680 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 SLC22A12Q96S37 553 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 LINC00597Q9H2U6 94 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 ST6GALNAC4Q9H4F1 302 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 TRPM5Q9NZQ8 1165 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 AGAP1Q9UPQ3 857 aa18.14■□□□□ 0.49
VPS29-204ENST00000548259 KIF26AQ9ULI4 1882 aaPredicted RBP18.14■□□□□ 0.49
VPS29-204ENST00000548259 UPK3BL1B0FP48 263 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 UPK3BL2E5RIL1 263 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 ZBTB24O43167 697 aaPredicted RBP18.13■□□□□ 0.49
VPS29-204ENST00000548259 HYAL3O43820 417 aaPredicted RBP18.13■□□□□ 0.49
VPS29-204ENST00000548259 APODP05090 189 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 ITGB3P05106 788 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 ENGP17813 658 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 EIF2DP41214 584 aaKnown RBP18.13■□□□□ 0.49
VPS29-204ENST00000548259 MAGEA11P43364 429 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 PPP3CCP48454 512 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 HNRNPDQ14103 355 aaKnown RBP18.13■□□□□ 0.49
VPS29-204ENST00000548259 PREPLQ4J6C6 727 aaPredicted RBP18.13■□□□□ 0.49
VPS29-204ENST00000548259 VSTM1Q6UX27 236 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 PGBD3Q8N328 593 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 OLIG1Q8TAK6 271 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 PNKPQ96T60 521 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 GCNT4Q9P109 453 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 ITGA11Q9UKX5 1188 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 L1RE1Q9UN81 338 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 ASPMQ8IZT6 3477 aa18.13■□□□□ 0.49
VPS29-204ENST00000548259 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 C2orf78A6NCI8 922 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.12■□□□□ 0.49
VPS29-204ENST00000548259 ADH1CP00326 375 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 LDHAP00338 332 aaKnown RBP18.12■□□□□ 0.49
VPS29-204ENST00000548259 CFIP05156 583 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 ACAT1P24752 427 aaKnown RBP18.12■□□□□ 0.49
VPS29-204ENST00000548259 ANXA13P27216 316 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 OPRD1P41143 372 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 GFPT1Q06210 699 aaPredicted RBP18.12■□□□□ 0.49
VPS29-204ENST00000548259 RING1Q06587 406 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 SLC23A3Q6PIS1 610 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 NUDT18Q6ZVK8 323 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 ARMCX6Q7L4S7 300 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 TMEFF1Q8IYR6 380 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 ADGRF2Q8IZF7 708 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 CSGALNACT2Q8N6G5 542 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 TOP6BLQ8N6T0 577 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 GDAP2Q9NXN4 497 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 SNX9Q9Y5X1 595 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 SPEGQ15772 3267 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 PKD1L2Q7Z442 2459 aa18.12■□□□□ 0.49
VPS29-204ENST00000548259 H3BQV1 296 aa18.11■□□□□ 0.49
VPS29-204ENST00000548259 LEFTY2O00292 366 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms