RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CLCN1P35523 988 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 MAGEA11P43364 429 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 EPHB3P54753 998 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 MAP3K7CLP57077 242 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 SLC8A3P57103 927 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 RPL10AP62906 217 aaKnown RBP15.86■□□□□ 0.13
NUP54-213ENST00000513352 PLD1Q13393 1074 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 CLUL1Q15846 466 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 TAF12Q16514 161 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 DDR2Q16832 855 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 SFMBT2Q5VUG0 894 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 SDHAF4Q5VUM1 108 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 TAF3Q5VWG9 929 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 ARHGAP17Q68EM7 881 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 ANKRD54Q6NXT1 300 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 TMC5Q6UXY8 1006 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 FMNL3Q8IVF7 1028 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 GPR152Q8TDT2 470 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 GIPC2Q8TF65 315 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 HDAC7Q8WUI4 952 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 BAP1Q92560 729 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 EDEM3Q9BZQ6 932 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 TTYH3Q9C0H2 523 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 PIDD1Q9HB75 910 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 DMAP1Q9NPF5 467 aaPredicted RBP15.86■□□□□ 0.13
NUP54-213ENST00000513352 TSPAN16Q9UKR8 245 aa15.86■□□□□ 0.13
NUP54-213ENST00000513352 LUC7L2Q9Y383 392 aaKnown RBP15.86■□□□□ 0.13
NUP54-213ENST00000513352 CCDC195A0A1B0GUA6 201 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 A0A1W2PQJ5 194 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 F8VP50 259 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 O00370 1275 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 XYLBO75191 536 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 TBX10O75333 385 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 MICAL2O94851 1124 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 CCDC172P0C7W6 258 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 FERP16591 822 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 CASP14P31944 242 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 KRT9P35527 623 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 CACNA2D1P54289 1103 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 ZBED6P86452 979 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 KCNC3Q14003 757 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 STILQ15468 1287 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 VSTM1Q6UX27 236 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 PAQR9Q6ZVX9 377 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 STKLD1Q8NE28 680 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 UBA3Q8TBC4 463 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 ZDHHC7Q9NXF8 308 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 MYO6Q9UM54 1294 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 CAPN11Q9UMQ6 739 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.85■□□□□ 0.13
NUP54-213ENST00000513352 BRWD1Q9NSI6 2320 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 SZT2Q5T011 3432 aa15.85■□□□□ 0.13
NUP54-213ENST00000513352 HNRNPA1P09651 372 aaKnown RBP eCLIP15.84■□□□□ 0.13
NUP54-213ENST00000513352 CYP11B1P15538 503 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 NPR3P17342 541 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 ATF6P18850 670 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 KCNA5P22460 613 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 BCAT1P54687 386 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 DLX2Q07687 328 aaPredicted RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 GOLGA8FQ08AF8 430 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 GOLGA8DPQ0D2H9 430 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 BST2Q10589 180 aaKnown RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 IFRD2Q12894 506 aaPredicted RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 CNGA2Q16280 664 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 LCLAT1Q6UWP7 414 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 TMEM184AQ6ZMB5 413 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 PASD1Q8IV76 773 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 SPC24Q8NBT2 197 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 ZNF606Q8WXB4 792 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 SMG7Q92540 1137 aaKnown RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 NUCKS1Q9H1E3 243 aaKnown RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 UBE2ZQ9H832 354 aaPredicted RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 SEPT11Q9NVA2 429 aaKnown RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 HSFX1Q9UBD0 423 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 MAGED2Q9UNF1 606 aaPredicted RBP15.84■□□□□ 0.13
NUP54-213ENST00000513352 CEP83Q9Y592 693 aa15.84■□□□□ 0.13
NUP54-213ENST00000513352 H3BQ06 376 aaPredicted RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 HOXB8P17481 243 aaPredicted RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 HOXA9P31269 272 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 GSE1Q14687 1217 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 CTC1Q2NKJ3 1217 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 TSR1Q2NL82 804 aaKnown RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 TDRD12Q587J7 1177 aaKnown RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 SMYD5Q6GMV2 418 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 DENND1BQ6P3S1 775 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 CLEC20AQ6ZU45 233 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 RTL10Q7L3V2 364 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 NOP9Q86U38 636 aaKnown RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 ITIH5Q86UX2 942 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 TTC30AQ86WT1 665 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 ANKRD52Q8NB46 1076 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 EPS8L1Q8TE68 723 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 SLC20A1Q8WUM9 679 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 HLA-CQ95604 372 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 ZNF512Q96ME7 567 aaPredicted RBP15.83■□□□□ 0.12
NUP54-213ENST00000513352 KCNK16Q96T55 309 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 SMOQ99835 787 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 ZSWIM1Q9BR11 485 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 DUSP16Q9BY84 665 aa15.83■□□□□ 0.12
NUP54-213ENST00000513352 PRKD2Q9BZL6 878 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms