RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 MYH10P35580 1976 aa28.31■■■□□ 2.12
MSX1-201ENST00000382723 MYO1FO00160 1098 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 FUT10Q6P4F1 479 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 DCUN1D2Q6PH85 259 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 CPNE8Q86YQ8 564 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 BCL7CQ8WUZ0 217 aaPredicted RBP28.3■■■□□ 2.12
MSX1-201ENST00000382723 ZNF689Q96CS4 500 aaPredicted RBP28.3■■■□□ 2.12
MSX1-201ENST00000382723 OSBPL9Q96SU4 736 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 SLC4A5Q9BY07 1137 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 KRT82Q9NSB4 513 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 TSC2P49815 1807 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 SF3B1O75533 1304 aaKnown RBP eCLIP28.3■■■□□ 2.12
MSX1-201ENST00000382723 FNDC1Q4ZHG4 1894 aaPredicted RBP28.3■■■□□ 2.12
MSX1-201ENST00000382723 ZNF185O15231 689 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 FGBP02675 491 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 COMTP21964 271 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 TSPY1Q01534 308 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 ZNF268Q14587 947 aaPredicted RBP28.3■■■□□ 2.12
MSX1-201ENST00000382723 MYLPFQ96A32 169 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 CAPZA3Q96KX2 299 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 WDR35Q9P2L0 1181 aa28.3■■■□□ 2.12
MSX1-201ENST00000382723 SYN3O14994 580 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 SLC8A3P57103 927 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 PLCB3Q01970 1234 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 OR6B2Q6IFH4 312 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 FAM35AQ86V20 835 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 LRRTM3Q86VH5 581 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 TMLHEQ9NVH6 421 aa28.29■■■□□ 2.12
MSX1-201ENST00000382723 BEST1O76090 585 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 FAM200BP0CF97 657 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 NPR3P17342 541 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 BTG3Q14201 252 aaPredicted RBP28.28■■■□□ 2.12
MSX1-201ENST00000382723 VARS2Q5ST30 1063 aaKnown RBP28.28■■■□□ 2.12
MSX1-201ENST00000382723 FAM171BQ6P995 826 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 FAM183BPQ6ZVS7 135 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 STK32AQ8WU08 396 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 RHOBTB2Q9BYZ6 727 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 METTL5Q9NRN9 209 aaKnown RBP28.28■■■□□ 2.12
MSX1-201ENST00000382723 TMEM191CA6NGB0 347 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 GABBR2O75899 941 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 OAZ2O95190 189 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 KRT3P12035 628 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 EPHB4P54760 987 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 MAP3K7CLP57077 242 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 TUBB2AQ13885 445 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 PPP1R15BQ5SWA1 713 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 COG1Q8WTW3 980 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 TUBB2BQ9BVA1 445 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 MIS12Q9H081 205 aa28.28■■■□□ 2.12
MSX1-201ENST00000382723 ALPK3Q96L96 1907 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 COL4A6Q14031 1691 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 XPO1O14980 1071 aaKnown RBP28.27■■■□□ 2.12
MSX1-201ENST00000382723 SPOPO43791 374 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 AP1G2O75843 785 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 OR4Q2P0C623 313 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 FAM102AQ5T9C2 384 aaPredicted RBP28.27■■■□□ 2.12
MSX1-201ENST00000382723 CLEC20AQ6ZU45 233 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 TMEM110Q86TL2 294 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 SCUBE3Q8IX30 993 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 MCRS1Q96EZ8 462 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 YME1L1Q96TA2 773 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 PKMYT1Q99640 499 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 CARD6Q9BX69 1037 aa28.27■■■□□ 2.12
MSX1-201ENST00000382723 RC3H2Q9HBD1 1191 aaKnown RBP28.27■■■□□ 2.12
MSX1-201ENST00000382723 SIGLEC16A6NMB1 481 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 KCNK3O14649 394 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 LCP1P13796 627 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 PRLRP16471 622 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 TCP1P17987 556 aaKnown RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 PLA2G4AP47712 749 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 RABGGTBP53611 331 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 GSCP56915 257 aaPredicted RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 TAP1Q03518 808 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 PIGZQ86VD9 579 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 HES6Q96HZ4 224 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 FGFR3P22607 806 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 RFC1P35251 1148 aaPredicted RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 SNX16P57768 344 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 ELAVL2Q12926 359 aaKnown RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 TAS1R1Q7RTX1 841 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 JOSD2Q8TAC2 188 aa28.26■■■□□ 2.11
MSX1-201ENST00000382723 PIWIL1Q96J94 861 aaKnown RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 ZMYND8Q9ULU4 1186 aaPredicted RBP28.26■■■□□ 2.11
MSX1-201ENST00000382723 PROSCO94903 275 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 CACNA2D1P54289 1103 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 RNASE9P60153 205 aaKnown RBP28.25■■■□□ 2.11
MSX1-201ENST00000382723 CTXN3Q4LDR2 81 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 SMARCD1Q96GM5 515 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 SMOQ99835 787 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 IP6K2Q9UHH9 426 aa28.25■■■□□ 2.11
MSX1-201ENST00000382723 MRPL42Q9Y6G3 142 aaKnown RBP28.25■■■□□ 2.11
MSX1-201ENST00000382723 SLU7O95391 586 aaKnown RBP28.24■■■□□ 2.11
MSX1-201ENST00000382723 BDNFP23560 247 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 OGDHQ02218 1023 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 MAPRE1Q15691 268 aaKnown RBP28.24■■■□□ 2.11
MSX1-201ENST00000382723 WHAMMP3Q1A5X7 153 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 SLC39A12Q504Y0 691 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 DAB2IPQ5VWQ8 1189 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 KCNT2Q6UVM3 1135 aa28.24■■■□□ 2.11
MSX1-201ENST00000382723 CMTR2Q8IYT2 770 aaKnown RBP28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms