RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RNF208Q9H0X6 261 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SLITRK6Q9H5Y7 841 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 EPB41L5Q9HCM4 733 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 KLHL11Q9NVR0 708 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 HESX1Q9UBX0 185 aa14.53□□□□□ -0.08
PTPRF-202ENST00000372405 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.53□□□□□ -0.08
PTPRF-202ENST00000372405 F8W810 466 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 I3L4J1 428 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 TTI1O43156 1089 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 PAPSS1O43252 624 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 LRCH4O75427 683 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 FAM163BP0C2L3 166 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 PSMA2P25787 234 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 TNFRSF8P28908 595 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 SSR1P43307 286 aaKnown RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 RPL34P49207 117 aaKnown RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CARSP49589 748 aaKnown RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 MNX1P50219 401 aaPredicted RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CDR1P51861 262 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 TAF5Q15542 800 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CLUL1Q15846 466 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 PAN2Q504Q3 1202 aaKnown RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CLLU1OSQ5K130 101 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 OR6B2Q6IFH4 312 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 TTC27Q6P3X3 843 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 AENQ8WTP8 325 aaKnown RBP14.52□□□□□ -0.09
PTPRF-202ENST00000372405 STK32AQ8WU08 396 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CASKIN2Q8WXE0 1202 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 TNIP3Q96KP6 325 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 BEGAINQ9BUH8 593 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 B3GNT5Q9BYG0 378 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 UBN1Q9NPG3 1134 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CRTAC1Q9NQ79 661 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 FAM53CQ9NYF3 392 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 LCMT1Q9UIC8 334 aa14.52□□□□□ -0.09
PTPRF-202ENST00000372405 CLDN5O00501 218 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 ITGB1P05556 798 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 HSPA6P17066 643 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 PTPN1P18031 435 aaKnown RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 FLT3P36888 993 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 BCAT1P54687 386 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 SLC25A11Q02978 314 aaKnown RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 BST2Q10589 180 aaKnown RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 TUSC3Q13454 348 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 CYP1B1Q16678 543 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 TCTN1Q2MV58 587 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 LRRC38Q5VT99 294 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 SCUBE3Q8IX30 993 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 WBP1LQ9NX94 342 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 DDX43Q9NXZ2 648 aaKnown RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 TANC1Q9C0D5 1861 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 GOLGA6L10A0A0M3HER8 536 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 C2CD4BA6NLJ0 364 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 PI4K2BG5E9Z4 385 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 MAP2K7O14733 419 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 PHF2O75151 1096 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 GRAP2O75791 330 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 B3GAT3O94766 335 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 RALAP11233 206 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 IL1R2P27930 398 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 BRCC3P46736 316 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 KLF1Q13351 362 aaPredicted RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 RAB6CQ53S08 254 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 SH3PXD2AQ5TCZ1 1133 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 DSTYKQ6XUX3 929 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 EXD1Q8NHP7 514 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 HASPINQ8TF76 798 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 CLEC4CQ8WTT0 213 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 ACSF2Q96CM8 615 aaPredicted RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 GDAP1L1Q96MZ0 367 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 HNRNPABQ99729 332 aaKnown RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 RTP3Q9BQQ7 232 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 SEZ6LQ9BYH1 1024 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 RAB6CQ9H0N0 254 aa14.51□□□□□ -0.09
PTPRF-202ENST00000372405 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.51□□□□□ -0.09
PTPRF-202ENST00000372405 MKI67P46013 3256 aaKnown RBP14.5□□□□□ -0.09
PTPRF-202ENST00000372405 BEST1O76090 585 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 EOMESO95936 686 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 ECHS1P30084 290 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 PTGIRP43119 386 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 ADCY2Q08462 1091 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 PLEKHG4Q58EX7 1191 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 MDH1BQ5I0G3 518 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 ZNF280BQ86YH2 543 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 IFT20Q8IY31 132 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 TMEM86AQ8N2M4 240 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 C12orf50Q8NA57 414 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-202ENST00000372405 RAPGEF5Q92565 580 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 RNF25Q96BH1 459 aaPredicted RBP14.5□□□□□ -0.09
PTPRF-202ENST00000372405 PLVAPQ9BX97 442 aa14.5□□□□□ -0.09
PTPRF-202ENST00000372405 PQBP1O60828 265 aaKnown RBP14.49□□□□□ -0.09
PTPRF-202ENST00000372405 DDHD2O94830 711 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 LHX1P48742 406 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 ZNF143P52747 638 aaPredicted RBP14.49□□□□□ -0.09
PTPRF-202ENST00000372405 SLC6A3Q01959 620 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 DSC1Q08554 894 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 BFSP2Q13515 415 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 MFSD7Q6UXD7 560 aa14.49□□□□□ -0.09
PTPRF-202ENST00000372405 DDX42Q86XP3 938 aaKnown RBP eCLIP14.49□□□□□ -0.09
PTPRF-202ENST00000372405 CCDC50Q8IVM0 306 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms