RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM20BO75063 409 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 FGRP09769 529 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ATN1P54259 1190 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 OLFML2AQ68BL7 652 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 FRMD5Q7Z6J6 570 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CHPFQ8IZ52 775 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ING4Q9UNL4 249 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 G2E3Q7L622 706 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 SCUBE2Q9NQ36 999 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC177Q9NQR7 707 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 BCLAF3A2AJT9 711 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CCT8L1PA6NM43 557 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC16A2P36021 539 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 QARSP47897 775 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 HIRAP54198 1017 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 EIF4A1P60842 406 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PLA2G4FQ68DD2 849 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 TMED8Q6PL24 325 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CENPIQ92674 756 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CNOT7Q9UIV1 285 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 RABGEF1Q9UJ41 708 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 NPR3P17342 541 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PCSK7Q16549 785 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PGS1Q32NB8 556 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 GALNTL6Q49A17 601 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ABCA5Q8WWZ7 1642 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SSNA1O43805 119 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 PRMT3O60678 531 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 ANXA9O76027 345 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 OR6B1O95007 311 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 CD2BP2O95400 341 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 ITGA3P26006 1051 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 NPY2RP49146 381 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM26Q6ZUK4 368 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 RCOR1Q9UKL0 485 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 IDH3BO43837 385 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 DGKIO75912 1065 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SOX11P35716 441 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 UGGT2Q9NYU1 1516 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SLCO1B7G3V0H7 640 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 RNASEH1O60930 286 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 VPS26AO75436 327 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF682O95780 498 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM98BQ52LJ0 330 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM179Q6ZVK1 233 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 EMILIN2Q9BXX0 1053 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF341Q9BYN7 854 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC38A7Q9NVC3 462 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 CHI3L2Q15782 390 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 EIF2S3LQ2VIR3 472 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 KIAA0232Q92628 1395 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 PDE8BO95263 885 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 VAV1P15498 845 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SCP2P22307 547 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 HSD3B2P26439 372 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM83BQ5T0W9 1011 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM220AQ7Z4H9 259 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 GSPT2Q8IYD1 628 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 RBBP8NLQ8NC74 664 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 TRPC4Q9UBN4 977 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 DUSP12Q9UNI6 340 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 C1orf232A0A0U1RR37 186 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 CLRN2A0PK11 232 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 LYNP07948 512 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 TSPAN19P0C672 248 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 MSANTD1Q6ZTZ1 278 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 PROSER1Q86XN7 944 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 GLYCTKQ8IVS8 523 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC44A2Q8IWA5 706 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 GPR101Q96P66 508 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM114B3SHH9 223 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 APOC1P02654 83 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 IFNAR1P17181 557 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 ALOX12P18054 663 aa14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 OTUD4Q01804 1114 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-201ENST00000263630 GNG14A0A1W2PPG7 69 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CD3EAPO15446 510 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 NFIAQ12857 509 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 KRT24Q2M2I5 525 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 FBXW10Q5XX13 1052 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC33Q8N5R6 958 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 KHDRBS3O75525 346 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 HOXA13P31271 388 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ALDH1A3P47895 512 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CCNG1P51959 295 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 MRNIPQ6NTE8 343 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 HAUS6Q7Z4H7 955 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM138Q9NPI0 162 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 PCDHGA3Q9Y5H0 932 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ACLYP53396 1101 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 SYTL1Q8IYJ3 562 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM79Q9BSE2 394 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 CINPQ9BW66 212 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 PRODHO43272 600 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 GCLCP48506 637 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ILF2Q12905 390 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 C2orf69Q8N8R5 385 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 KCTD14Q9BQ13 255 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 ZMYM1Q5SVZ6 1142 aa14.41□□□□□ -0.1
CCDC88A-201ENST00000263630 LAYNQ6UX15 382 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms