RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 ITGB1BP2Q9UKP3 347 aa5.36□□□□□ -1.55
CCDC54-201ENST00000261058 TRGV11A0A075B6L2 103 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 PIPSLA2A3N6 862 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 UNC119BA6NIH7 251 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 F5H697 171 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 H7C4K7 107 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 CD6P30203 668 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 COPAP53621 1224 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 FSTL1Q12841 308 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 PREPLQ4J6C6 727 aaPredicted RBP5.35□□□□□ -1.55
CCDC54-201ENST00000261058 ABHD17BQ5VST6 288 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 ICE2Q659A1 982 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 KIAA0408Q6ZU52 694 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 SKAP1Q86WV1 359 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 SSH3Q8TE77 659 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 MLST8Q9BVC4 326 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 NRDE2Q9H7Z3 1164 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 SLC2A4RGQ9NR83 387 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 ZSCAN32Q9NX65 697 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 RIPOR2Q9Y4F9 1068 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 PCDHGB2Q9Y5G2 931 aa5.35□□□□□ -1.55
CCDC54-201ENST00000261058 A0A087WV62 115 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 AQP7P3A6NL99 342 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 hCG_1984214I3L0E3 225 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 HNRNPDLO14979 420 aaKnown RBP5.34□□□□□ -1.55
CCDC54-201ENST00000261058 ADAMTS3O15072 1205 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 EIF3JO75822 258 aaKnown RBP5.34□□□□□ -1.55
CCDC54-201ENST00000261058 PTDSS1P48651 473 aaKnown RBP5.34□□□□□ -1.55
CCDC54-201ENST00000261058 HNRNPMP52272 730 aaKnown RBP eCLIP5.34□□□□□ -1.55
CCDC54-201ENST00000261058 SATB1Q01826 763 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 KRT17Q04695 432 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 STK3Q13188 491 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 KIAA0895LQ68EN5 471 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 ERAP2Q6P179 960 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 VWA1Q6PCB0 445 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 C1orf228Q6PIY5 440 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 USP17L6PQ6QN14 398 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 KCTD20Q7Z5Y7 419 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 SYNE4Q8N205 404 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 SLC30A5Q8TAD4 765 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 LPIN2Q92539 896 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 FAM136AQ96C01 138 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 CRB3Q9BUF7 120 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 SERHL2Q9H4I8 314 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 AS3MTQ9HBK9 375 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 NECTIN3Q9NQS3 549 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 TM7SF3Q9NS93 570 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 HDAC9Q9UKV0 1011 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 MAN2B2Q9Y2E5 1009 aa5.34□□□□□ -1.55
CCDC54-201ENST00000261058 MRPS17Q9Y2R5 130 aaKnown RBP5.34□□□□□ -1.55
CCDC54-201ENST00000261058 WDR27A2RRH5 827 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 RAB27BO00194 218 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 NARSO43776 548 aaKnown RBP5.33□□□□□ -1.56
CCDC54-201ENST00000261058 PPP3CBP16298 524 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 BLOC1S1P78537 153 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 TNFAIP2Q03169 654 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 E2F2Q14209 437 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 LSM12Q3MHD2 195 aaKnown RBP5.33□□□□□ -1.56
CCDC54-201ENST00000261058 ARHGAP40Q5TG30 622 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 RGS7BPQ6MZT1 257 aaPredicted RBP5.33□□□□□ -1.56
CCDC54-201ENST00000261058 KRT73Q86Y46 540 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 SMC5Q8IY18 1101 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 MORC4Q8TE76 937 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 ZNF747Q9BV97 191 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 MAGEB5Q9BZ81 275 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 PTPRHQ9HD43 1115 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 HEYLQ9NQ87 328 aaPredicted RBP5.33□□□□□ -1.56
CCDC54-201ENST00000261058 TBCCD1Q9NVR7 557 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 SYBUQ9NX95 663 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 VPS51Q9UID3 782 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 CDC23Q9UJX2 597 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 LRCH1Q9Y2L9 728 aa5.33□□□□□ -1.56
CCDC54-201ENST00000261058 PLEKHD1A6NEE1 506 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 CD3EAPO15446 510 aaKnown RBP5.32□□□□□ -1.56
CCDC54-201ENST00000261058 TPH1P17752 444 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 TGM1P22735 817 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 TIAL1Q01085 375 aaKnown RBP eCLIP5.32□□□□□ -1.56
CCDC54-201ENST00000261058 ITIH3Q06033 890 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 CHAF1AQ13111 956 aaPredicted RBP5.32□□□□□ -1.56
CCDC54-201ENST00000261058 SF3B3Q15393 1217 aaKnown RBP5.32□□□□□ -1.56
CCDC54-201ENST00000261058 PTCHD3Q3KNS1 767 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 LY6G5CQ5SRR4 150 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 RRAGBQ5VZM2 374 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 IGFL4Q6B9Z1 124 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 DBX2Q6ZNG2 339 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 DTX2Q86UW9 622 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 TXLNBQ8N3L3 684 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 GLIS1Q8NBF1 620 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 MYCBPAPQ8TBZ2 947 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 PROKR1Q8TCW9 393 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 POF1BQ8WVV4 589 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 ATG4AQ8WYN0 398 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 PPP2R3CQ969Q6 453 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 ZNF566Q969W8 418 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 PTCD3Q96EY7 689 aaKnown RBP5.32□□□□□ -1.56
CCDC54-201ENST00000261058 LRRC46Q96FV0 321 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 ZDHHC12Q96GR4 267 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 FAM227BQ96M60 508 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 TBC1D23Q9NUY8 699 aa5.32□□□□□ -1.56
CCDC54-201ENST00000261058 KCTD5Q9NXV2 234 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms