RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 INCA1Q0VD86 236 aa23.88■■□□□ 1.41
CDX1-201ENST00000231656 SIX1Q15475 284 aaPredicted RBP23.88■■□□□ 1.41
CDX1-201ENST00000231656 LIN28BQ6ZN17 250 aaKnown RBP eCLIP23.88■■□□□ 1.41
CDX1-201ENST00000231656 ABI1Q8IZP0 508 aa23.88■■□□□ 1.41
CDX1-201ENST00000231656 C3orf58Q8NDZ4 430 aa23.88■■□□□ 1.41
CDX1-201ENST00000231656 TBC1D13Q9NVG8 400 aa23.88■■□□□ 1.41
CDX1-201ENST00000231656 TCRBV7S2A1N4TA0A589 114 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 CYP1B1Q16678 543 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 SOWAHAQ2M3V2 549 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 NPAS4Q8IUM7 802 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 TSEN2Q8NCE0 465 aaKnown RBP23.87■■□□□ 1.41
CDX1-201ENST00000231656 DDX27Q96GQ7 796 aaKnown RBP23.87■■□□□ 1.41
CDX1-201ENST00000231656 UROC1Q96N76 676 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 BARX2Q9UMQ3 279 aaPredicted RBP23.87■■□□□ 1.41
CDX1-201ENST00000231656 CEP83Q9Y592 693 aa23.87■■□□□ 1.41
CDX1-201ENST00000231656 FNDC1Q4ZHG4 1894 aaPredicted RBP23.87■■□□□ 1.41
CDX1-201ENST00000231656 TMEM191CA6NGB0 347 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 CHRNA3P32297 505 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 GATMP50440 423 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 DSC1Q08554 894 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 DHX34Q14147 1143 aaKnown RBP23.86■■□□□ 1.41
CDX1-201ENST00000231656 PPP1R15BQ5SWA1 713 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 ZNF280BQ86YH2 543 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 TTC39CQ8N584 583 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.86■■□□□ 1.41
CDX1-201ENST00000231656 CASD1Q96PB1 797 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 MRPL45Q9BRJ2 306 aaKnown RBP23.86■■□□□ 1.41
CDX1-201ENST00000231656 MED4Q9NPJ6 270 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 POLR3GO15318 223 aaPredicted RBP23.86■■□□□ 1.41
CDX1-201ENST00000231656 HOXA2O43364 376 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 PSTPIP1O43586 416 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 B4GALT3O60512 393 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 DDHD2O94830 711 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 PTGIRP43119 386 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 TAS2R40P59535 323 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 RPL7AP62424 266 aaKnown RBP23.86■■□□□ 1.41
CDX1-201ENST00000231656 DR1Q01658 176 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 ORC1Q13415 861 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 LIMS2Q7Z4I7 341 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 ERICH1Q86X53 443 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 DDX42Q86XP3 938 aaKnown RBP eCLIP23.86■■□□□ 1.41
CDX1-201ENST00000231656 MREGQ8N565 214 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 ZBTB9Q96C00 473 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 TMEM176AQ96HP8 235 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 IP6K2Q9UHH9 426 aa23.86■■□□□ 1.41
CDX1-201ENST00000231656 ABHD14A-ACY1A0A1B0GW23 586 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 FAM187AA6NFU0 413 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 AGPSO00116 658 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 SYF2O95926 243 aaKnown RBP23.85■■□□□ 1.41
CDX1-201ENST00000231656 PFKMP08237 780 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 RARAP10276 462 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 RNASELQ05823 741 aaKnown RBP23.85■■□□□ 1.41
CDX1-201ENST00000231656 DAB2IPQ5VWQ8 1189 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 DNAJC24Q6P3W2 148 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 APPL2Q8NEU8 664 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 TRIM51Q9BSJ1 452 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 PLVAPQ9BX97 442 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 PRKAG2Q9UGJ0 569 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 PCYOX1Q9UHG3 505 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 CYTH4Q9UIA0 394 aa23.85■■□□□ 1.41
CDX1-201ENST00000231656 SBDSQ9Y3A5 250 aaKnown RBP eCLIP23.85■■□□□ 1.41
CDX1-201ENST00000231656 FSCN2O14926 492 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 DAPK3O43293 454 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 HUS1O60921 280 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 ACRP10323 421 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 NDST1P52848 882 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 ZNF252P-AS1Q0IIN9 211 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 PTPN20Q4JDL3 420 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 TTC27Q6P3X3 843 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 RHOT1Q8IXI2 618 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 C12orf50Q8NA57 414 aaPredicted RBP23.84■■□□□ 1.41
CDX1-201ENST00000231656 FAM71BQ8TC56 605 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 MAGOHBQ96A72 148 aaKnown RBP23.84■■□□□ 1.41
CDX1-201ENST00000231656 C18orf8Q96DM3 657 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 MTUS1Q9ULD2 1270 aa23.84■■□□□ 1.41
CDX1-201ENST00000231656 UTP11Q9Y3A2 253 aaKnown RBP23.84■■□□□ 1.41
CDX1-201ENST00000231656 O00370 1275 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 CYB561D2O14569 222 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 B3GAT3O94766 335 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 UPP2O95045 317 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 TAP1Q03518 808 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 DPH6Q7L8W6 267 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 COLGALT2Q8IYK4 626 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 TOP6BLQ8N6T0 577 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 C3orf20Q8ND61 904 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 KBTBD7Q8WVZ9 684 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 SENP8Q96LD8 212 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 RAB17Q9H0T7 212 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 NEUROG2Q9H2A3 272 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 LCMT1Q9UIC8 334 aa23.83■■□□□ 1.41
CDX1-201ENST00000231656 GOLGA6BA6NDN3 693 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 VDRP11473 427 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 HLTFQ14527 1009 aaKnown RBP eCLIP23.83■■□□□ 1.4
CDX1-201ENST00000231656 KCTD19Q17RG1 926 aaPredicted RBP23.83■■□□□ 1.4
CDX1-201ENST00000231656 HSP90B2PQ58FF3 399 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 CYP4A22Q5TCH4 519 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 DUPD1Q68J44 220 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 DCLRE1AQ6PJP8 1040 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 CD300LGQ6UXG3 332 aa23.83■■□□□ 1.4
CDX1-201ENST00000231656 JAMLQ86YT9 394 aa23.83■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms