RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	YJL213W	P40896	331 aa		4.21	□□□□□ -1.73
UBP9	YER098W	YFR054C	P43622	192 aa		4.21	□□□□□ -1.73
UBP9	YER098W	WSC2	P53832	503 aa		4.21	□□□□□ -1.73
UBP9	YER098W	JID1	Q12350	301 aa		4.21	□□□□□ -1.73
UBP9	YER098W	RPL15A	P05748	204 aa	Known RBP	4.21	□□□□□ -1.74
UBP9	YER098W	PIS1	P06197	220 aa	Known RBP	4.21	□□□□□ -1.74
UBP9	YER098W	COX10	P21592	462 aa		4.21	□□□□□ -1.74
UBP9	YER098W	MCH2	P36032	473 aa		4.21	□□□□□ -1.74
UBP9	YER098W	YIL029C	P40538	142 aa		4.21	□□□□□ -1.74
UBP9	YER098W	NCA3	P46955	337 aa		4.21	□□□□□ -1.74
UBP9	YER098W	VEL1	P53058	206 aa		4.21	□□□□□ -1.74
UBP9	YER098W	YGR039W	P53225	103 aa		4.21	□□□□□ -1.74
UBP9	YER098W	YLR365W	Q7LIF2	110 aa		4.21	□□□□□ -1.74
UBP9	YER098W	RPL23A	P0CX41	137 aa	Known RBP	4.2	□□□□□ -1.74
UBP9	YER098W	RPL23B	P0CX42	137 aa	Known RBP	4.2	□□□□□ -1.74
UBP9	YER098W	PHO85	P17157	305 aa		4.2	□□□□□ -1.74
UBP9	YER098W	RPL16A	P26784	199 aa	Known RBP	4.2	□□□□□ -1.74
UBP9	YER098W	SRP21	P32342	167 aa		4.2	□□□□□ -1.74
UBP9	YER098W	QRI5	P32344	111 aa		4.2	□□□□□ -1.74
UBP9	YER098W	RPB7	P34087	171 aa		4.2	□□□□□ -1.74
UBP9	YER098W	CYB5	P40312	120 aa		4.2	□□□□□ -1.74
UBP9	YER098W	BLM10	P43583	2143 aa		4.2	□□□□□ -1.74
UBP9	YER098W	GEP7	P53171	287 aa		4.2	□□□□□ -1.74
UBP9	YER098W	BRP1	P53194	125 aa		4.2	□□□□□ -1.74
UBP9	YER098W	LIP2	Q06005	328 aa		4.2	□□□□□ -1.74
UBP9	YER098W	GRE1	Q08969	168 aa		4.2	□□□□□ -1.74
UBP9	YER098W	NHP2	P32495	156 aa	Predicted RBP	4.2	□□□□□ -1.74
UBP9	YER098W	YHR180W	P38868	163 aa		4.2	□□□□□ -1.74
UBP9	YER098W	YNR064C	P53750	290 aa		4.2	□□□□□ -1.74
UBP9	YER098W	YOL118C	Q08259	102 aa		4.2	□□□□□ -1.74
UBP9	YER098W	DGA1	Q08650	418 aa		4.2	□□□□□ -1.74
UBP9	YER098W	YOR292C	Q08743	309 aa		4.2	□□□□□ -1.74
UBP9	YER098W	YPR108W-A	Q3E7B3	70 aa		4.2	□□□□□ -1.74
UBP9	YER098W	CYC3	P06182	269 aa		4.19	□□□□□ -1.74
UBP9	YER098W	HMRA1	P0CY11	126 aa		4.19	□□□□□ -1.74
UBP9	YER098W	CPT1	P17898	393 aa		4.19	□□□□□ -1.74
UBP9	YER098W	SFT2	P38166	215 aa		4.19	□□□□□ -1.74
UBP9	YER098W	EGT2	P42835	1041 aa		4.19	□□□□□ -1.74
UBP9	YER098W	MST27	P53176	234 aa		4.19	□□□□□ -1.74
UBP9	YER098W	YGR050C	P53231	118 aa		4.19	□□□□□ -1.74
UBP9	YER098W	IRC25	Q07951	179 aa		4.19	□□□□□ -1.74
UBP9	YER098W	MIM1	Q08176	113 aa		4.19	□□□□□ -1.74
UBP9	YER098W	FIT3	Q08907	204 aa		4.19	□□□□□ -1.74
UBP9	YER098W	YNL162W-A	Q3E7A8	72 aa		4.19	□□□□□ -1.74
UBP9	YER098W	SPS100	P13130	326 aa		4.19	□□□□□ -1.74
UBP9	YER098W	RPL16B	P26785	198 aa	Known RBP	4.19	□□□□□ -1.74
UBP9	YER098W	OXA1	P39952	402 aa		4.19	□□□□□ -1.74
UBP9	YER098W	API2	Q04413	109 aa		4.19	□□□□□ -1.74
UBP9	YER098W	YDL180W	Q12301	547 aa		4.19	□□□□□ -1.74
UBP9	YER098W	DFM1	Q12743	341 aa	Known RBP	4.19	□□□□□ -1.74
UBP9	YER098W	YOR192C-C	Q3E736	78 aa		4.19	□□□□□ -1.74
UBP9	YER098W	YMR316C-A	I2HB70	103 aa		4.18	□□□□□ -1.74
UBP9	YER098W	FCY1	Q12178	158 aa		4.18	□□□□□ -1.74
UBP9	YER098W	YOR343C	Q12484	108 aa		4.18	□□□□□ -1.74
UBP9	YER098W	SEC16	P48415	2195 aa	Known RBP	4.18	□□□□□ -1.74
UBP9	YER098W	TRP1	P00912	224 aa		4.18	□□□□□ -1.74
UBP9	YER098W	MRPL20	P22354	195 aa	Predicted RBP	4.18	□□□□□ -1.74
UBP9	YER098W	YCR043C	P25361	127 aa		4.18	□□□□□ -1.74
UBP9	YER098W	IES6	P32617	166 aa		4.18	□□□□□ -1.74
UBP9	YER098W	MIC12	P38341	106 aa		4.18	□□□□□ -1.74
UBP9	YER098W	YIA6	P40556	373 aa		4.18	□□□□□ -1.74
UBP9	YER098W	CWP2	P43497	92 aa		4.18	□□□□□ -1.74
UBP9	YER098W	YDR102C	Q03864	110 aa		4.18	□□□□□ -1.74
UBP9	YER098W	YLR281C	Q05863	155 aa		4.18	□□□□□ -1.74
UBP9	YER098W	RDL2	Q08742	149 aa	Known RBP	4.18	□□□□□ -1.74
UBP9	YER098W	SWD3	P38123	315 aa		4.17	□□□□□ -1.74
UBP9	YER098W	YIL014C-A	Q02598	104 aa		4.17	□□□□□ -1.74
UBP9	YER098W	YLR296W	Q05898	108 aa		4.17	□□□□□ -1.74
UBP9	YER098W	MSA1	Q08471	629 aa		4.17	□□□□□ -1.74
UBP9	YER098W	RPS14A	P06367	137 aa	Known RBP	4.16	□□□□□ -1.74
UBP9	YER098W	RPS14B	P39516	138 aa	Known RBP	4.16	□□□□□ -1.74
UBP9	YER098W	MIX17	Q03667	156 aa		4.16	□□□□□ -1.74
UBP9	YER098W	YOL029C	Q08187	201 aa		4.16	□□□□□ -1.74
UBP9	YER098W	CYR1	P08678	2026 aa	Known RBP	4.16	□□□□□ -1.74
UBP9	YER098W	ACC1	Q00955	2233 aa	Known RBP	4.16	□□□□□ -1.74
UBP9	YER098W	HEM4	P06174	275 aa		4.16	□□□□□ -1.74
UBP9	YER098W	FZF1	P32805	299 aa		4.16	□□□□□ -1.74
UBP9	YER098W	YFL067W	P43537	175 aa		4.16	□□□□□ -1.74
UBP9	YER098W	NCE101	Q02820	53 aa		4.16	□□□□□ -1.74
UBP9	YER098W	SDH7	Q04401	133 aa		4.16	□□□□□ -1.74
UBP9	YER098W	YOR186W	Q08560	144 aa		4.16	□□□□□ -1.74
UBP9	YER098W	DAP1	Q12091	152 aa		4.16	□□□□□ -1.74
UBP9	YER098W	BRR2	P32639	2163 aa	Known RBP	4.16	□□□□□ -1.74
UBP9	YER098W	SRX1	P36077	127 aa		4.15	□□□□□ -1.74
UBP9	YER098W	RAV2	Q03956	351 aa		4.15	□□□□□ -1.74
UBP9	YER098W	HPA2	Q06592	156 aa		4.15	□□□□□ -1.74
UBP9	YER098W	MRPL24	P36525	258 aa	Predicted RBP	4.15	□□□□□ -1.75
UBP9	YER098W	CCS1	P40202	249 aa	Known RBP	4.15	□□□□□ -1.75
UBP9	YER098W	LST8	P41318	303 aa		4.15	□□□□□ -1.75
UBP9	YER098W	UBC13	P52490	153 aa		4.15	□□□□□ -1.75
UBP9	YER098W	YHP1	Q04116	353 aa		4.15	□□□□□ -1.75
UBP9	YER098W	APS1	P35181	156 aa		4.14	□□□□□ -1.75
UBP9	YER098W	YER076C	P40049	302 aa		4.14	□□□□□ -1.75
UBP9	YER098W	YPI1	P43587	155 aa		4.14	□□□□□ -1.75
UBP9	YER098W	YFR045W	P43617	309 aa		4.14	□□□□□ -1.75
UBP9	YER098W	TOM7	P53507	60 aa		4.14	□□□□□ -1.75
UBP9	YER098W	FLO9	P39712	1322 aa		4.14	□□□□□ -1.75
UBP9	YER098W	RPA12	P32529	125 aa	Known RBP	4.14	□□□□□ -1.75
UBP9	YER098W	YKL023C-A	Q2V2P3	75 aa		4.14	□□□□□ -1.75
UBP9	YER098W	RPL30	P14120	105 aa	Known RBP	4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 84 ms