RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SMOC2Q9H3U7 446 aa8.61□□□□□ -1.03
NUP54-215ENST00000514313 MLXIPQ9HAP2 919 aa8.61□□□□□ -1.03
NUP54-215ENST00000514313 PDP2Q9P2J9 529 aa8.61□□□□□ -1.03
NUP54-215ENST00000514313 SRP68Q9UHB9 627 aaKnown RBP8.61□□□□□ -1.03
NUP54-215ENST00000514313 HS3ST4Q9Y661 456 aa8.61□□□□□ -1.03
NUP54-215ENST00000514313 AATKQ6ZMQ8 1374 aa8.61□□□□□ -1.03
NUP54-215ENST00000514313 CCDC195A0A1B0GUA6 201 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 PIAS2O75928 621 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 GCLCP48506 637 aaPredicted RBP8.6□□□□□ -1.03
NUP54-215ENST00000514313 LOXL3P58215 753 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 SURF1Q15526 300 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 ZNF750Q32MQ0 723 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 FAM102AQ5T9C2 384 aaPredicted RBP8.6□□□□□ -1.03
NUP54-215ENST00000514313 FAXCQ5TGI0 409 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 AGAP9Q5VTM2 703 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 TSHZ3Q63HK5 1081 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 MRNIPQ6NTE8 343 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 RHOT2Q8IXI1 618 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 FUKQ8N0W3 1084 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 BPIFB1Q8TDL5 484 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 OTUD7AQ8TE49 926 aaPredicted RBP8.6□□□□□ -1.03
NUP54-215ENST00000514313 RILPL2Q969X0 211 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 PNKPQ96T60 521 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 REXO4Q9GZR2 422 aaKnown RBP8.6□□□□□ -1.03
NUP54-215ENST00000514313 CTTNBP2NLQ9P2B4 639 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 MTO1Q9Y2Z2 717 aaKnown RBP8.6□□□□□ -1.03
NUP54-215ENST00000514313 RAD54BQ9Y620 910 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 SLC30A1Q9Y6M5 507 aa8.6□□□□□ -1.03
NUP54-215ENST00000514313 A0A0B4J269 797 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 A0A1B0GVC2 190 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 AQP7P3A6NL99 342 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 PRRT4C9JH25 899 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 FCHO1O14526 889 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 PCDH17O14917 1159 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 USP1O94782 785 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 ITGA2BP08514 1039 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 GYS1P13807 737 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 MC2RQ01718 297 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 NHLH2Q02577 135 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 MAPRE1Q15691 268 aaKnown RBP8.59□□□□□ -1.03
NUP54-215ENST00000514313 TAF12Q16514 161 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 OGFOD2Q6N063 350 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 KLHL17Q6TDP4 642 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 LAYNQ6UX15 382 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 MOGAT3Q86VF5 341 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 SYT8Q8NBV8 401 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 POC1BQ8TC44 478 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 ZNF483Q8TF39 744 aaPredicted RBP8.59□□□□□ -1.03
NUP54-215ENST00000514313 USP13Q92995 863 aaPredicted RBP8.59□□□□□ -1.03
NUP54-215ENST00000514313 VPS45Q9NRW7 570 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 HPSEQ9Y251 543 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 DTNAQ9Y4J8 743 aa8.59□□□□□ -1.03
NUP54-215ENST00000514313 hCG_1984214I3L0E3 225 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 EYA2O00167 538 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 RAD17O75943 681 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 RASAL1O95294 804 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 LRPAP1P30533 357 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 PXNP49023 591 aaPredicted RBP8.58□□□□□ -1.04
NUP54-215ENST00000514313 RABGGTBP53611 331 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 PNLIPRP1P54315 467 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 NSUN2Q08J23 767 aaKnown RBP eCLIP8.58□□□□□ -1.04
NUP54-215ENST00000514313 SIM2Q14190 667 aaPredicted RBP8.58□□□□□ -1.04
NUP54-215ENST00000514313 TCTN3Q6NUS6 607 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 CLEC4GQ6UXB4 293 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.58□□□□□ -1.04
NUP54-215ENST00000514313 RUBCNQ92622 972 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 MIEF2Q96C03 454 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 ZSWIM1Q9BR11 485 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 FAM83DQ9H4H8 585 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 ZBTB26Q9HCK0 441 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 TERF2IPQ9NYB0 399 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 LPAR3Q9UBY5 353 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 HERC5Q9UII4 1024 aaKnown RBP8.58□□□□□ -1.04
NUP54-215ENST00000514313 MRPS17Q9Y2R5 130 aaKnown RBP8.58□□□□□ -1.04
NUP54-215ENST00000514313 DUSP10Q9Y6W6 482 aa8.58□□□□□ -1.04
NUP54-215ENST00000514313 SRGAP2O75044 1071 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 COQ9O75208 318 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 GLP2RO95838 553 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 SPATA31D3P0C874 917 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 CKMT1AP12532 417 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 FGFR4P22455 802 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 APOBEC3AP31941 199 aaPredicted RBP8.57□□□□□ -1.04
NUP54-215ENST00000514313 SATB1Q01826 763 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 MYO1EQ12965 1108 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 MANEALQ5VSG8 457 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 TMEM108Q6UXF1 575 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 SPATA31D4Q6ZUB0 917 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 SP8Q8IXZ3 490 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 OR56A1Q8NGH5 318 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 SENP7Q9BQF6 1050 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 SLC25A32Q9H2D1 315 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 CXorf36Q9H7Y0 433 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 PPP4R1LQ9P1A2 415 aa8.57□□□□□ -1.04
NUP54-215ENST00000514313 USP15Q9Y4E8 981 aaPredicted RBP8.57□□□□□ -1.04
NUP54-215ENST00000514313 B9A039 149 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 TOR1BO14657 336 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 ACTL6BO94805 426 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 SUN1O94901 812 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 ARP10275 920 aa8.56□□□□□ -1.04
NUP54-215ENST00000514313 KCNA3P22001 575 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms