RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 HOXA7P31268 230 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 LLGL1Q15334 1064 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ME3Q16798 604 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 SH2D4BQ5SQS7 431 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 FAM117AQ9C073 453 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ALG13Q9NP73 1137 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ZDHHC4Q9NPG8 344 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 HSPBP1Q9NZL4 362 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNHIT2Q9UHR6 403 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 C3orf70A6NLC5 250 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 TBX4P57082 545 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 POLR2LP62875 67 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 CCL14Q16627 93 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 C6orf118Q5T5N4 469 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ARL6IP4Q66PJ3 421 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ENOSF1Q7L5Y1 443 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 IRF7Q92985 503 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 HPS3Q969F9 1004 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 GPR88Q9GZN0 384 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ELOVL4Q9GZR5 314 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 RAB17Q9H0T7 212 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 DLC1Q96QB1 1528 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 A0A1W2PQ45 241 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 A0A1W2PQY0 241 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 OGTO15294 1046 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 TBC1D4O60343 1298 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 AARSP49588 968 aaKnown RBP eCLIP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 APOBEC3HQ6NTF7 200 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 GPATCH11Q8N954 259 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 DBF4BQ8NFT6 615 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 PRCCQ92733 491 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 LENG1Q96BZ8 264 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 INTS4Q96HW7 963 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 SUN2Q9UH99 717 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 RSPH14Q9UHP6 348 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ZMYM2Q9UBW7 1377 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 WTIPA6NIX2 430 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 FZD9O00144 591 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CFLARO15519 480 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 EXTL3O43909 919 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 SKAP2O75563 359 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ALOX15P16050 662 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CTNNA1P35221 906 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 DUSP3P51452 185 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CAPRIN1Q14444 709 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 SEZ6Q53EL9 994 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 TAF8Q7Z7C8 310 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 MCEMP1Q8IX19 187 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 DEFB119Q8N690 84 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 C18orf8Q96DM3 657 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 WDR35Q9P2L0 1181 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC27A5Q9Y2P5 690 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 PASKQ96RG2 1323 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 H3BQ06 376 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 RBAK-RBAKDNI3L0D1 243 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 MX2P20592 715 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 PSMD8P48556 350 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 FMR1Q06787 632 aaKnown RBP eCLIP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ALX1Q15699 326 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 MAN2A1Q16706 1144 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CYB5R4Q7L1T6 521 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CDKL3Q8IVW4 592 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 UHRF1Q96T88 793 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 C1QTNF1Q9BXJ1 281 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC13A1Q9BZW2 595 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 TRIM10Q9UDY6 481 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ARHGAP26Q9UNA1 814 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 DLL1O00548 723 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 MLYCDO95822 493 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 RPN2P04844 631 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 NMT1P30419 496 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 NCALDP61601 193 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 GRIK3Q13003 919 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 PDAP1Q13442 181 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 MTFR1Q15390 333 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 KNOP1Q1ED39 458 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 C6orf132Q5T0Z8 1188 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 TDHQ8IZJ6 230 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 LGI2Q8N0V4 545 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 NDEL1Q9GZM8 345 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 PORCNQ9H237 461 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 RPRD1BQ9NQG5 326 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 SUSD2Q9UGT4 822 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ADGRA2Q96PE1 1338 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 GRAP2O75791 330 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 WEE2P0C1S8 567 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 AKT2P31751 481 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CHRNA3P32297 505 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 COASYQ13057 564 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 BRD3Q15059 726 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 C8orf34Q49A92 452 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 FASTKD1Q53R41 847 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 XKR4Q5GH76 650 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ACOT1Q86TX2 421 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 IL22RA1Q8N6P7 574 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF614Q8N883 585 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 NUP85Q9BW27 656 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 RABEP2Q9H5N1 569 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF510Q9Y2H8 683 aa9.62□□□□□ -0.87
LIMCH1-202ENST00000381753 CLTCL1P53675 1640 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms