RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 MAPK13O15264 365 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 STAU1O95793 577 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 FAM163BP0C2L3 166 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 CSH1P0DML2 217 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 CSH2P0DML3 217 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 P4HA1P13674 534 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ATF6P18850 670 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 WARSP23381 471 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 CDC25CP30307 473 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 PSMC2P35998 433 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 CLCN5P51795 746 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 VAMP7P51809 220 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 VCPP55072 806 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 MYL6P60660 151 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 NCOA4Q13772 614 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 NFIL3Q16649 462 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ZNF699Q32M78 642 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ZNF667Q5HYK9 610 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 FAM78AQ5JUQ0 283 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ZNF658Q5TYW1 1059 aaPredicted RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 TDRD10Q5VZ19 366 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 TANGO2Q6ICL3 276 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 INTS8Q75QN2 995 aaKnown RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 TMC8Q8IU68 726 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 FAM186BQ8IYM0 893 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 SMYD4Q8IYR2 804 aaPredicted RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 SHKBP1Q8TBC3 707 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ZSCAN18Q8TBC5 510 aaPredicted RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 PLEKHO2Q8TD55 490 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 KBTBD7Q8WVZ9 684 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 SMARCD2Q92925 531 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 FUBP3Q96I24 572 aaKnown RBP eCLIP11.99□□□□□ -0.49
RFFL-204ENST00000414419 SHDQ96IW2 340 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 ASB16Q96NS5 453 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 TSG101Q99816 390 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 LRRC3Q9BY71 257 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 CHMP5Q9NZZ3 219 aa11.99□□□□□ -0.49
RFFL-204ENST00000414419 MAGEC2Q9UBF1 373 aaPredicted RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 MAGED2Q9UNF1 606 aaPredicted RBP11.99□□□□□ -0.49
RFFL-204ENST00000414419 PTPRDP23468 1912 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 MIA3Q5JRA6 1907 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 NUP210Q8TEM1 1887 aaPredicted RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 MYBPHLA2RUH7 354 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 A8MXQ7 604 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 DPYSL4O14531 572 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 CETN3O15182 167 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 HCRTO43612 131 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 TACC1O75410 805 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 MOSPD3O75425 235 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 C4BPAP04003 597 aaKnown RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 CYP2F1P24903 491 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 LMO2P25791 158 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 NUBP1P53384 320 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 PSMC1P62191 440 aaKnown RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 DLG4P78352 724 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 CLDN10P78369 228 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 CYP27A1Q02318 531 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 STIM1Q13586 685 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 SGSM1Q2NKQ1 1148 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 EDRF1Q3B7T1 1238 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 CFAP221Q4G0U5 840 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 GPR158Q5T848 1215 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 FAM171BQ6P995 826 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 LIMS2Q7Z4I7 341 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 SCN4BQ8IWT1 228 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 E2F7Q96AV8 911 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 ZSWIM3Q96MP5 696 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 MRPL45Q9BRJ2 306 aaKnown RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 TRMT61BQ9BVS5 477 aaKnown RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 IMPG2Q9BZV3 1241 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 GZF1Q9H116 711 aaPredicted RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 BRD9Q9H8M2 597 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 ZNF334Q9HCZ1 680 aaPredicted RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 ARHGEF3Q9NR81 526 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 UXTQ9UBK9 157 aaPredicted RBP11.98□□□□□ -0.49
RFFL-204ENST00000414419 PCDHA5Q9Y5H7 936 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 GREB1Q4ZG55 1949 aa11.98□□□□□ -0.49
RFFL-204ENST00000414419 KRBA1A5PL33 1030 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 ATP2C2O75185 946 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 AKAP3O75969 853 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 EPB41P11171 864 aaKnown RBP11.97□□□□□ -0.49
RFFL-204ENST00000414419 PSMC3P17980 439 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 TRIM21P19474 475 aaKnown RBP11.97□□□□□ -0.49
RFFL-204ENST00000414419 AOC1P19801 751 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 ANXA13P27216 316 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 GRIK1P39086 918 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 PIK3CAP42336 1068 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 PRCPP42785 496 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 DDR2Q16832 855 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 ZACNQ401N2 412 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 SLC44A4Q53GD3 710 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 IER5LQ5T953 404 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 GAREM2Q75VX8 874 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 SV2AQ7L0J3 742 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 YAF2Q8IY57 180 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 CCDC150Q8NCX0 1101 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 MYCBPAPQ8TBZ2 947 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 DEPDC1BQ8WUY9 529 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 TAF4BQ92750 862 aa11.97□□□□□ -0.49
RFFL-204ENST00000414419 ERCC4Q92889 916 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms