RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 RNASEH2AO75792 299 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 ITGAVP06756 1048 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 CFHP08603 1231 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 ANXA5P08758 320 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 NRLP54845 237 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 ORC2Q13416 577 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 GRIN3AQ8TCU5 1115 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 NR1H4Q96RI1 486 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 DDIT4Q9NX09 232 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 SAGE1Q9NXZ1 904 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 TBC1D14Q9P2M4 693 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 VPS51Q9UID3 782 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 TDRKHQ9Y2W6 561 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 MEGF6O75095 1541 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 STX7O15400 261 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 PFKFB1P16118 471 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SCP2P22307 547 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 GTF2E2P29084 291 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 NLRP12P59046 1061 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 MTA1Q13330 715 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 DNAJC21Q5F1R6 531 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ARSJQ5FYB0 599 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 PID1Q7Z2X4 250 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 CCDC186Q7Z3E2 898 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 OR14C36Q8NHC7 312 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 HBS1LQ9Y450 684 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ZC3H13Q5T200 1668 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 MSH3P20585 1137 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 TP53BP2Q13625 1128 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SETDB1Q15047 1291 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 FBXO47Q5MNV8 452 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SKAP1Q86WV1 359 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC25A41Q8N5S1 370 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF655Q8N720 491 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC26A7Q8TE54 656 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 KDM4CQ9H3R0 1056 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 NEDD8-MDP1E9PL57 170 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SCAMP3O14828 347 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ARRB1P49407 418 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 RABGGTBP53611 331 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 CRYBB1P53674 252 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 PDCLQ13371 301 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 RCN2Q14257 317 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 EOGTQ5NDL2 527 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 FAM173BQ6P4H8 233 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SRRM1Q8IYB3 904 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 COLGALT2Q8IYK4 626 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 C10orf53Q8N6V4 93 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ENOX1Q8TC92 643 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SLC20A1Q8WUM9 679 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 CCDC51Q96ER9 411 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 TM6SF1Q9BZW5 370 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 NSUN3Q9H649 340 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 WDR41Q9HAD4 459 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 TYW1Q9NV66 732 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 ZNF189O75820 626 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 KRT33AO76009 404 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 LSP1P33241 339 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 GUCY1A2P33402 732 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 PTK7Q13308 1070 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 SNX1Q13596 522 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 RRM2BQ7LG56 351 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 KREMEN2Q8NCW0 462 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 FBXL13Q8NEE6 735 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 UBA3Q8TBC4 463 aa9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 C16orf45Q96MC5 204 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 BAG1Q99933 345 aaPredicted RBP9.64□□□□□ -0.87
LIMCH1-202ENST00000381753 UNCXA6NJT0 531 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 MAN2B1O00754 1011 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 KCNK3O14649 394 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 TBX3O15119 743 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 EPHX1P07099 455 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ATP5C1P36542 298 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 NAMPTP43490 491 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 KHDRBS2Q5VWX1 349 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 CYB5D1Q6P9G0 228 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 C3orf67Q6ZVT6 689 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 EXD1Q8NHP7 514 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 RSPH1Q8WYR4 309 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 OTUB1Q96FW1 271 aaPredicted RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 CNOT8Q9UFF9 292 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 CIB2O75838 187 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 HNF1BP35680 557 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 RGS4P49798 205 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 CSTF1Q05048 431 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 SCRN1Q12765 414 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 SLMAPQ14BN4 828 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 EDRF1Q3B7T1 1238 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 DUSP28Q4G0W2 176 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 C8orf74Q6P047 294 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 LAYNQ6UX15 382 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 MARK2Q7KZI7 788 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 PATL1Q86TB9 770 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 MMGT1Q8N4V1 131 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 TFB1MQ8WVM0 346 aaKnown RBP9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 MAML3Q96JK9 1138 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 HAPLN3Q96S86 360 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 BTBD7Q9P203 1132 aa9.63□□□□□ -0.87
LIMCH1-202ENST00000381753 ATRNO75882 1429 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms