RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, human

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-204	ENST00000594806	SNX25	Q9H3E2	840 aa		27.58	■■■□□ 2.01
TRIM28-204	ENST00000594806	PIDD1	Q9HB75	910 aa		27.58	■■■□□ 2.01
TRIM28-204	ENST00000594806	TMEM63C	Q9P1W3	806 aa		27.58	■■■□□ 2.01
TRIM28-204	ENST00000594806	CDH9	Q9ULB4	789 aa		27.58	■■■□□ 2.01
TRIM28-204	ENST00000594806	C2orf16	Q68DN1	1984 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	MTMR11	A4FU01	709 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	P4HA2	O15460	535 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	GNL1	P36915	607 aa	Predicted RBP	27.57	■■■□□ 2
TRIM28-204	ENST00000594806	CETN1	Q12798	172 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	PLD1	Q13393	1074 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	MAPRE1	Q15691	268 aa	Known RBP	27.57	■■■□□ 2
TRIM28-204	ENST00000594806	SLC39A12	Q504Y0	691 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	INTS6L	Q5JSJ4	861 aa	Known RBP	27.57	■■■□□ 2
TRIM28-204	ENST00000594806	OSTM1	Q86WC4	334 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	FAM114A1	Q8IWE2	563 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	TRIM59	Q8IWR1	403 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	SPPL2B	Q8TCT7	592 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	TMEM209	Q96SK2	561 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	THAP9	Q9H5L6	903 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	RAB20	Q9NX57	234 aa		27.57	■■■□□ 2
TRIM28-204	ENST00000594806	SEC24A	O95486	1093 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	LRG1	P02750	347 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	TUFM	P49411	452 aa	Known RBP	27.56	■■■□□ 2
TRIM28-204	ENST00000594806	NOP14	P78316	857 aa	Known RBP	27.56	■■■□□ 2
TRIM28-204	ENST00000594806	STX1A	Q16623	288 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	WDR44	Q5JSH3	913 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	ADHFE1	Q8IWW8	467 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	ADAMTS19	Q8TE59	1207 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	INSL5	Q9Y5Q6	135 aa		27.56	■■■□□ 2
TRIM28-204	ENST00000594806	LETM1	O95202	739 aa	Predicted RBP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	FMO5	P49326	533 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	CAVIN1	Q6NZI2	390 aa	Known RBP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	LRRTM3	Q86VH5	581 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	OR6B3	Q8NGW1	331 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	PGLYRP2	Q96PD5	576 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	MRPL45	Q9BRJ2	306 aa	Known RBP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	FAM124B	Q9H5Z6	455 aa	Predicted RBP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	CYP3A43	Q9HB55	503 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	WDR6	Q9NNW5	1121 aa	Known RBP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	POLI	Q9UNA4	740 aa		27.55	■■■□□ 2
TRIM28-204	ENST00000594806	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	27.55	■■■□□ 2
TRIM28-204	ENST00000594806	DUSP4	Q13115	394 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	SKOR2	Q2VWA4	1001 aa	Predicted RBP	27.54	■■■□□ 2
TRIM28-204	ENST00000594806	CBWD6	Q4V339	395 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	CBWD3	Q5JTY5	395 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	CBWD5	Q5RIA9	395 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	FAM171B	Q6P995	826 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	ELMOD1	Q8N336	334 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	ENOX1	Q8TC92	643 aa	Known RBP	27.54	■■■□□ 2
TRIM28-204	ENST00000594806	SYT15	Q9BQS2	421 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	BCO2	Q9BYV7	579 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	ABCB6	Q9NP58	842 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	PCDHB5	Q9Y5E4	795 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	XIRP2	A4UGR9	3374 aa		27.54	■■■□□ 2
TRIM28-204	ENST00000594806	VNN2	O95498	520 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	PRKCSH	P14314	528 aa	Predicted RBP	27.53	■■■□□ 2
TRIM28-204	ENST00000594806	TTC39C	Q8N584	583 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	ATAD1	Q8NBU5	361 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	FUBP3	Q96I24	572 aa	Known RBP eCLIP	27.53	■■■□□ 2
TRIM28-204	ENST00000594806	CNOT6L	Q96LI5	555 aa	Known RBP	27.53	■■■□□ 2
TRIM28-204	ENST00000594806	PKMYT1	Q99640	499 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	PI4K2A	Q9BTU6	479 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	NIF3L1	Q9GZT8	377 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	POMK	Q9H5K3	350 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	UST	Q9Y2C2	406 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	NR2E1	Q9Y466	385 aa		27.53	■■■□□ 2
TRIM28-204	ENST00000594806	NCOR1	O75376	2440 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	UNC80	Q8N2C7	3258 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	CCL16	O15467	120 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	WEE2	P0C1S8	567 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	ACAT1	P24752	427 aa	Known RBP	27.52	■■■□□ 2
TRIM28-204	ENST00000594806	LMO2	P25791	158 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	ASPA	P45381	313 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	ALDH1A3	P47895	512 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	ZP2	Q05996	745 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	KCNH2	Q12809	1159 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	C4orf50	Q6ZRC1	276 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	UNC93A	Q86WB7	457 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	SEMA4D	Q92854	862 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	UHRF1	Q96T88	793 aa	Predicted RBP	27.52	■■■□□ 2
TRIM28-204	ENST00000594806	DNAI2	Q9GZS0	605 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	SMYD3	Q9H7B4	428 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	GTF3C4	Q9UKN8	822 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	ASB3	Q9Y575	518 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	DENND4A	Q7Z401	1863 aa		27.52	■■■□□ 2
TRIM28-204	ENST00000594806	C19orf67	A6NJJ6	358 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806		A8MXQ7	604 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	AFP	P02771	609 aa	Known RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	PTPN2	P17706	415 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	TRIM21	P19474	475 aa	Known RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	CFAP221	Q4G0U5	840 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	SPOPL	Q6IQ16	392 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	IRF2BP1	Q8IU81	584 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	TNIP3	Q96KP6	325 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	ZNF512	Q96ME7	567 aa	Predicted RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	APOBEC3G	Q9HC16	384 aa	Known RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	AVEN	Q9NQS1	362 aa	Predicted RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	MAGEC2	Q9UBF1	373 aa	Predicted RBP	27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	YIPF1	Q9Y548	306 aa		27.51	■■□□□ 1.99
TRIM28-204	ENST00000594806	CLUH	O75153	1309 aa		27.5	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms