RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 KIF12Q96FN5 646 aa19.2■□□□□ 0.66
SMPD3-211ENST00000568373 TMEM176AQ96HP8 235 aa19.2■□□□□ 0.66
SMPD3-211ENST00000568373 OSBPL8Q9BZF1 889 aa19.2■□□□□ 0.66
SMPD3-211ENST00000568373 CHST7Q9NS84 486 aa19.2■□□□□ 0.66
SMPD3-211ENST00000568373 NPTXRO95502 500 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 OGDHQ02218 1023 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 ORC1Q13415 861 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 PIGHQ14442 188 aaPredicted RBP19.19■□□□□ 0.66
SMPD3-211ENST00000568373 PPP1R7Q15435 360 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 LRRC38Q5VT99 294 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 CATSPER4Q7RTX7 472 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 ATG4AQ8WYN0 398 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 LENG1Q96BZ8 264 aaPredicted RBP19.19■□□□□ 0.66
SMPD3-211ENST00000568373 DCLK3Q9C098 648 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 FAM124BQ9H5Z6 455 aaPredicted RBP19.19■□□□□ 0.66
SMPD3-211ENST00000568373 CYTH4Q9UIA0 394 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 TRIP11Q15643 1979 aa19.19■□□□□ 0.66
SMPD3-211ENST00000568373 GJC1P36383 396 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 SNX1Q13596 522 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 MFSD10Q14728 455 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 CHADLQ6NUI6 762 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 SLC27A1Q6PCB7 646 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 NIPA2Q8N8Q9 360 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 USP6NLQ92738 828 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 HEMGNQ9BXL5 484 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 PLEKHA5Q9HAU0 1116 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 CDHR5Q9HBB8 845 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 HOMER3Q9NSC5 361 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 ATP8A1Q9Y2Q0 1164 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 TRPM7Q96QT4 1865 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 RALGAPA2Q2PPJ7 1873 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 GOLGA6L10A6NI86 522 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 F8VP50 259 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 CYP2C9P11712 490 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 ZNF844Q08AG5 666 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 INCA1Q0VD86 236 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 PCBP1Q15365 356 aaKnown RBP eCLIP19.18■□□□□ 0.66
SMPD3-211ENST00000568373 KCTD16Q68DU8 428 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 OR2W6PQ8NHA6 318 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 PPP1R13LQ8WUF5 828 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 OSMRQ99650 979 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 FAM129AQ9BZQ8 928 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 MTRF1LQ9UGC7 380 aaKnown RBP19.18■□□□□ 0.66
SMPD3-211ENST00000568373 BARX2Q9UMQ3 279 aaPredicted RBP19.18■□□□□ 0.66
SMPD3-211ENST00000568373 DERAQ9Y315 318 aa19.18■□□□□ 0.66
SMPD3-211ENST00000568373 DARSP14868 501 aaKnown RBP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 TCF4P15884 667 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 IRX5P78411 483 aaPredicted RBP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 KRT17Q04695 432 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 CCL14Q16627 93 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 NOTUMQ6P988 496 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 RUFY4Q6ZNE9 571 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 SYDE1Q6ZW31 735 aaPredicted RBP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 RCOR2Q8IZ40 523 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 TTC39CQ8N584 583 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 SH2D3CQ8N5H7 860 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 GRK7Q8WTQ7 553 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 RBM41Q96IZ5 413 aaKnown RBP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 ATP6V1G3Q96LB4 118 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 TMBIM4Q9HC24 238 aa19.17■□□□□ 0.66
SMPD3-211ENST00000568373 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 R3HDM2Q9Y2K5 976 aaKnown RBP19.17■□□□□ 0.66
SMPD3-211ENST00000568373 SIGLEC16A6NMB1 481 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 HMGB1P1B2RPK0 211 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 MICAL2O94851 1124 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 MYZAPP0CAP1 466 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 VDRP11473 427 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 CETN2P41208 172 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 CPT1AP50416 773 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 GSCP56915 257 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 ADAM17P78536 824 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 NFX1Q12986 1120 aaKnown RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 C17orf99Q6UX52 265 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 ANKS1BQ7Z6G8 1248 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 ART4Q93070 314 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 SNX27Q96L92 541 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 CPXM1Q96SM3 734 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 SNTG2Q9NY99 539 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 TJP2Q9UDY2 1190 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 FEZ2Q9UHY8 353 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 HAS3O00219 553 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 SHOX2O60902 331 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 HMGCRP04035 888 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 KRT3P12035 628 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 YY1P25490 414 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 ACTN2P35609 894 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 PSEN2P49810 448 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 PSMC1P62191 440 aaKnown RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 HIC1Q14526 733 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 CNGA2Q16280 664 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 CCNG2Q16589 344 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 ATP13A4Q4VNC1 1196 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 RNF25Q96BH1 459 aaPredicted RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 EIF2AQ9BY44 585 aaKnown RBP19.16■□□□□ 0.66
SMPD3-211ENST00000568373 KLHL11Q9NVR0 708 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 WDR35Q9P2L0 1181 aa19.16■□□□□ 0.66
SMPD3-211ENST00000568373 GOLGA8SH3BPF8 625 aa19.15■□□□□ 0.66
SMPD3-211ENST00000568373 GAS8O95995 478 aa19.15■□□□□ 0.66
SMPD3-211ENST00000568373 CYP2B6P20813 491 aa19.15■□□□□ 0.66
SMPD3-211ENST00000568373 RFC1P35251 1148 aaPredicted RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms