RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 GOLGA8IPA6NC78 632 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 OTOL1A6NHN0 477 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 GOLGA8JA6NMD2 632 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 CHURC1-FNTBB4DL54 471 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 SPECC1L-ADORA2AF8WAN1 911 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 K7ESF4 209 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 TULP1O00294 542 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 HMGA1P17096 107 aaKnown RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 FNTBP49356 437 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 KPNA1P52294 538 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 RESTQ13127 1097 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 CUL4AQ13619 759 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 PUM1Q14671 1186 aaKnown RBP eCLIP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 PON2Q15165 354 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 NAIF1Q69YI7 327 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 MAMSTRQ6ZN01 415 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 CD302Q8IX05 232 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 YAF2Q8IY57 180 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 ABCA7Q8IZY2 2146 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 CXorf38Q8TB03 319 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 FAM200AQ8TCP9 573 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 CSGALNACT1Q8TDX6 532 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 POMGNT1Q8WZA1 660 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 TSPAN18Q96SJ8 248 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 OXCT2Q9BYC2 517 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 ASB7Q9H672 318 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 TASP1Q9H6P5 420 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 ABI2Q9NYB9 513 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 DERAQ9Y315 318 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 C2CD2Q9Y426 696 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 ASB3Q9Y575 518 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 MYO18AQ92614 2054 aaKnown RBP12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 LAMA1P25391 3075 aa12.48□□□□□ -0.41
PRPF40B-212ENST00000551111 HAPLN1P10915 354 aaPredicted RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 ACAT1P24752 427 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 CXCL12P48061 93 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 TAF6P49848 677 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 ATXN1P54253 815 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 SPEM2Q0P670 501 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 TRIM68Q6AZZ1 485 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 OSTM1Q86WC4 334 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 KRI1Q8N9T8 703 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 GLIS3Q8NEA6 775 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 FAM213AQ9BRX8 229 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 PI4K2AQ9BTU6 479 aa12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.47□□□□□ -0.41
PRPF40B-212ENST00000551111 NUP205Q92621 2012 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 KPNA7A9QM74 516 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 BMP15O95972 392 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 F11P03951 625 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 SYT1P21579 422 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 POLR2BP30876 1174 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 MCM2P49736 904 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 CCR3P51677 355 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 MLLT6P55198 1093 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 TFAMQ00059 246 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 CCINQ13939 588 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 RRAGBQ5VZM2 374 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 LMBRD2Q68DH5 695 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 TXNDC8Q6A555 127 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 SLFN12LQ6IEE8 588 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 PRR23BQ6ZRT6 265 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 PDCL2Q8N4E4 241 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 MAB21L3Q8N8X9 362 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 C1orf127Q8N9H9 656 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 BPIFB1Q8TDL5 484 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 USP13Q92995 863 aaPredicted RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 HPS3Q969F9 1004 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 E2F7Q96AV8 911 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 CBWD1Q9BRT8 395 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 PCIF1Q9H4Z3 704 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 MRPL44Q9H9J2 332 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 FBRSL1Q9HCM7 1045 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 HPS4Q9NQG7 708 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 GKN1Q9NS71 199 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 FOXD4L1Q9NU39 408 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 SIX4Q9UIU6 781 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 L1RE1Q9UN81 338 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 AGAP1Q9UPQ3 857 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 SRPRBQ9Y5M8 271 aaKnown RBP12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 MYH10P35580 1976 aa12.46□□□□□ -0.41
PRPF40B-212ENST00000551111 PTPRJQ12913 1337 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 DCDC2BA2VCK2 349 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 DPYSL4O14531 572 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 EXTL3O43909 919 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 TADA3O75528 432 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 PRPF6O94906 941 aaKnown RBP12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 ITGB3P05106 788 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 ARSAP15289 507 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 SCP2P22307 547 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 CYP2F1P24903 491 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 PXNP49023 591 aaPredicted RBP12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 TUFMP49411 452 aaKnown RBP12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 NLRP12P59046 1061 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 ARHGAP29Q52LW3 1261 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 L1TD1Q5T7N2 865 aaKnown RBP12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 ITIH5Q86UX2 942 aa12.45□□□□□ -0.42
PRPF40B-212ENST00000551111 RALGPS2Q86X27 583 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms