RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 RAB23Q9ULC3 237 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 SMG5Q9UPR3 1016 aaKnown RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 NPHP4O75161 1426 aaPredicted RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 ATP1A3P13637 1013 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 ARHGDIBP52566 201 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 CDH6P55285 790 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 KCNQ4P56696 695 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 FBXO42Q6P3S6 717 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 ZNF512Q96ME7 567 aaPredicted RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 CLCC1Q96S66 551 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 POLR3FQ9H1D9 316 aaPredicted RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 ANXA11P50995 505 aaKnown RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 TSPAN14Q8NG11 270 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 CAAP1Q9H8G2 361 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 NARFQ9UHQ1 456 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 ARAP3Q8WWN8 1544 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 ZNF335Q9H4Z2 1342 aaPredicted RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 SNPHO15079 494 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 GYS1P13807 737 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 TMED10P49755 219 aaKnown RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 TRIM65Q6PJ69 517 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 HEATR4Q86WZ0 1026 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 SPATA33Q96N06 139 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 MRPL1Q9BYD6 325 aaKnown RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 SLC24A3Q9HC58 644 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 AVENQ9NQS1 362 aaPredicted RBP12.57□□□□□ -0.4
PCF11-201ENST00000298281 PCSK1NQ9UHG2 260 aa12.57□□□□□ -0.4
PCF11-201ENST00000298281 GRXCR2A6NFK2 248 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PIK3CDO00329 1044 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SUSD4Q5VX71 490 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SEPT5Q99719 369 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 RAVER2Q9HCJ3 691 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 ENTPD7Q9NQZ7 604 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 FAM217BQ9NTX9 383 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 PRR12Q9ULL5 1215 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 C3orf70A6NLC5 250 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 SMIM22K7EJ46 135 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SWSAP1Q6NVH7 229 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SEPT3Q9UH03 358 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PADI4Q9UM07 663 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 MROH7-TTC4A0A0A0MT08 1334 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SMAPO00193 183 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 TFRCP02786 760 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 KLC1Q07866 573 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 COG2Q14746 738 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 ARMC4Q5T2S8 1044 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PI16Q6UXB8 463 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 LRRC74BQ6ZQY2 392 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 MARK2Q7KZI7 788 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 ATL2Q8NHH9 583 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 DPF3Q92784 378 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 KIF12Q96FN5 646 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 ZNF668Q96K58 619 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 LXNQ9BS40 222 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 INTS2Q9H0H0 1204 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 OSBPL5Q9H0X9 879 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 CYP39A1Q9NYL5 469 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 MARK1Q9P0L2 795 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 NDOR1Q9UHB4 597 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SPEF1Q9Y4P9 236 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SLC30A1Q9Y6M5 507 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 CPSF1Q10570 1443 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 RRM2P31350 389 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 KCNB1Q14721 858 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 CCSAPQ6IQ19 270 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 MED15Q96RN5 788 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 ELL3Q9HB65 397 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 CD209Q9NNX6 404 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 MLXIPLQ9NP71 852 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 CTNNAL1Q9UBT7 734 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 ACSL4O60488 711 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 RTN2O75298 545 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 HLA-DQA2P01906 255 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PID1Q7Z2X4 250 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 HOMEZQ8IX15 550 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 CLEC4MQ9H2X3 399 aaPredicted RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 TTLL13PA6NNM8 815 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 RNASEH1O60930 286 aaKnown RBP12.56□□□□□ -0.4
PCF11-201ENST00000298281 GRK3P35626 688 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 RGS4P49798 205 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PLIN5Q00G26 463 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 DNAJC3Q13217 504 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 EPHA7Q15375 998 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SYCP2LQ5T4T6 812 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 FBXO38Q6PIJ6 1188 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 IFNEQ86WN2 208 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PIK3R5Q8WYR1 880 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 PIGBQ92521 554 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 HDAC6Q9UBN7 1215 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 CDHR2Q9BYE9 1310 aa12.56□□□□□ -0.4
PCF11-201ENST00000298281 SASH1O94885 1247 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 SERPINB9P50453 376 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 TPI1P60174 286 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 RHAGQ02094 409 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 ZSWIM7Q19AV6 140 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 NDUFAF6Q330K2 333 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 R3HCC1LQ7Z5L2 792 aaKnown RBP12.55□□□□□ -0.4
PCF11-201ENST00000298281 RCOR2Q8IZ40 523 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 KATNAL1Q9BW62 490 aa12.55□□□□□ -0.4
PCF11-201ENST00000298281 ENO3P13929 434 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms